Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU70_RS15060 Genome accession   NZ_CP148746
Coordinates   3104389..3105018 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1322HEC0010     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3099389..3110018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU70_RS15040 (WHU70_15035) ycbZ 3099790..3101550 (-) 1761 WP_000156526.1 Lon protease family protein -
  WHU70_RS15045 (WHU70_15040) matP 3101736..3102188 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU70_RS15050 (WHU70_15045) ompA 3102264..3103304 (-) 1041 WP_000750416.1 porin OmpA -
  WHU70_RS15055 (WHU70_15050) sulA 3103661..3104170 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU70_RS15060 (WHU70_15055) sxy/tfoX 3104389..3105018 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU70_RS15065 (WHU70_15060) yccS 3104981..3107143 (-) 2163 WP_000875015.1 YccS family putative transporter -
  WHU70_RS15070 (WHU70_15065) yccF 3107153..3107599 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WHU70_RS15075 (WHU70_15070) helD 3107722..3109776 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=873445 WHU70_RS15060 WP_000839153.1 3104389..3105018(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0010]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=873445 WHU70_RS15060 WP_000839153.1 3104389..3105018(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0010]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1