Detailed information NTG0873400

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: RCF60_RS02005
• Genome accession: NZ_CP133320
• Coordinates: 396869..398017 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 1X1Y
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 391869..403017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCF60_RS01985 (RCF60_01990)	-	392272..392955 (-)	684	WP_032872874.1	ABC transporter ATP-binding protein	-
RCF60_RS01990 (RCF60_01995)	-	392970..394400 (-)	1431	WP_032872876.1	ABC transporter permease	-
RCF60_RS01995 (RCF60_02000)	-	394613..395296 (+)	684	WP_032872879.1	response regulator transcription factor	-
RCF60_RS02000 (RCF60_02005)	-	395283..396716 (+)	1434	WP_161503657.1	sensor histidine kinase	-
RCF60_RS02005 (RCF60_02010)	rapC	396869..398017 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
RCF60_RS02010 (RCF60_02015)	phrC	398001..398120 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
RCF60_RS02015 (RCF60_02020)	-	398271..398381 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
RCF60_RS02020 (RCF60_02025)	-	398461..399825 (-)	1365	WP_007609394.1	aspartate kinase	-
RCF60_RS02025 (RCF60_02030)	ceuB	400239..401192 (+)	954	WP_032872883.1	ABC transporter permease	Machinery gene
RCF60_RS02030 (RCF60_02035)	-	401182..402129 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
RCF60_RS02035 (RCF60_02040)	-	402123..402881 (+)	759	WP_007609404.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=873400 RCF60_RS02005 WP_007410270.1 396869..398017(+) (rapC) [Bacillus velezensis strain 1X1Y]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=873400 RCF60_RS02005 WP_007410270.1 396869..398017(+) (rapC) [Bacillus velezensis strain 1X1Y]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTACCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAGGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATATAACGTCCGGATTATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568