Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   K6K00_RS01900 Genome accession   NZ_AP024628
Coordinates   362231..362629 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain BEST3145     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 357231..367629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K00_RS01865 - 357981..358178 (+) 198 WP_121509395.1 hypothetical protein -
  K6K00_RS01870 (BsBEST3145_03460) yckC 358198..358653 (+) 456 WP_014478793.1 RDD family protein -
  K6K00_RS01875 (BsBEST3145_03470) yckD 358735..359067 (+) 333 WP_014478794.1 YckD family protein -
  K6K00_RS01880 (BsBEST3145_03480) - 359195..359617 (+) 423 WP_014478795.1 MarR family winged helix-turn-helix transcriptional regulator -
  K6K00_RS01885 (BsBEST3145_03490) - 359605..359925 (+) 321 WP_014478796.1 DUF3147 family protein -
  K6K00_RS01890 (BsBEST3145_03500) - 359944..360688 (+) 745 Protein_342 AAA family ATPase -
  K6K00_RS01895 (BsBEST3145_03520) bglC 360761..362194 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  K6K00_RS01900 (BsBEST3145_03530) nin/comJ 362231..362629 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  K6K00_RS01905 (BsBEST3145_03540) nucA/comI 362656..363105 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  K6K00_RS01910 tlpC 363273..364994 (-) 1722 Protein_346 methyl-accepting chemotaxis protein TlpC -
  K6K00_RS01915 (BsBEST3145_03570) hxlB 365105..365662 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  K6K00_RS01920 (BsBEST3145_03580) hxlA 365668..366300 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  K6K00_RS01925 (BsBEST3145_03590) hxlR 366529..366891 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=87335 K6K00_RS01900 WP_014478800.1 362231..362629(-) (nin/comJ) [Bacillus subtilis strain BEST3145]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=87335 K6K00_RS01900 WP_014478800.1 362231..362629(-) (nin/comJ) [Bacillus subtilis strain BEST3145]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977


Multiple sequence alignment