Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RCH27_RS04520 Genome accession   NZ_CP133289
Coordinates   963192..963602 (+) Length   136 a.a.
NCBI ID   WP_011794057.1    Uniprot ID   A1TKL1
Organism   Paracidovorax citrulli strain YDAC2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 958192..968602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCH27_RS04500 (RCH27_04505) - 959444..960466 (-) 1023 WP_116212574.1 pectate lyase -
  RCH27_RS04505 (RCH27_04510) hemL 960626..961939 (-) 1314 WP_011794054.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RCH27_RS04510 (RCH27_04515) thiD 961923..962879 (-) 957 WP_011794055.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RCH27_RS04515 (RCH27_04520) - 962974..963147 (+) 174 WP_011794056.1 rubredoxin -
  RCH27_RS04520 (RCH27_04525) pilG 963192..963602 (+) 411 WP_011794057.1 response regulator Regulator
  RCH27_RS04525 (RCH27_04530) - 963602..963967 (+) 366 WP_011794058.1 response regulator -
  RCH27_RS04530 (RCH27_04535) - 963984..964511 (+) 528 WP_011794059.1 chemotaxis protein CheW -
  RCH27_RS04535 (RCH27_04540) - 964542..966779 (+) 2238 WP_011794060.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15067.40 Da        Isoelectric Point: 8.2578

>NTDB_id=873319 RCH27_RS04520 WP_011794057.1 963192..963602(+) (pilG) [Paracidovorax citrulli strain YDAC2]
MTKLTQTSGATFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDGYQTCAIIKRN
ARFADTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLKAVQQFGNAQQGAM

Nucleotide


Download         Length: 411 bp        

>NTDB_id=873319 RCH27_RS04520 WP_011794057.1 963192..963602(+) (pilG) [Paracidovorax citrulli strain YDAC2]
GTGACGAAATTGACCCAGACCAGTGGCGCAACCTTCAAGGTGCTTGTCGTGGACGACAGCAACACCATCCGCCGGAGTGC
CGAGATCTTTCTCAAGCAGGGAGGCCACGAGGTCCTGCTGGCGGACGATGGCTTCGACGCCCTGGCGAAGGTCAATGATT
ATCAACCCCAGTTGATTTTCTGCGACATCCTGATGCCGAAACTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAAT
GCGCGCTTCGCGGACACGCCCGTTGTCATGCTCTCGTCAAAAGACGGGGTATTCGACAAGGCGCGCGGCCGCATGGTGGG
CTGCCAGGAATATCTCACCAAACCATTTACCAAAGACCAGCTGCTGAAAGCGGTTCAGCAGTTCGGTAATGCCCAACAAG
GAGCGATGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TKL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

86.029

0.493