Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU38_RS00480 Genome accession   NZ_CP148583
Coordinates   99278..99907 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1322HEC0001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 94278..104907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU38_RS00460 (WHU38_00460) ycbZ 94679..96439 (-) 1761 WP_000156526.1 Lon protease family protein -
  WHU38_RS00465 (WHU38_00465) matP 96625..97077 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU38_RS00470 (WHU38_00470) ompA 97153..98193 (-) 1041 WP_000750416.1 porin OmpA -
  WHU38_RS00475 (WHU38_00475) sulA 98550..99059 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU38_RS00480 (WHU38_00480) sxy/tfoX 99278..99907 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU38_RS00485 (WHU38_00485) yccS 99870..102032 (-) 2163 WP_000875015.1 YccS family putative transporter -
  WHU38_RS00490 (WHU38_00490) yccF 102042..102488 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WHU38_RS00495 (WHU38_00495) helD 102611..104665 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=873308 WHU38_RS00480 WP_000839153.1 99278..99907(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=873308 WHU38_RS00480 WP_000839153.1 99278..99907(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1