Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU03_RS06115 Genome accession   NZ_CP148581
Coordinates   1220696..1221325 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1322HEC0002     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215696..1226325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU03_RS06100 (WHU03_06100) helD 1215938..1217992 (-) 2055 WP_000420536.1 DNA helicase IV -
  WHU03_RS06105 (WHU03_06105) yccF 1218115..1218561 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU03_RS06110 (WHU03_06110) yccS 1218571..1220733 (+) 2163 WP_000875044.1 YccS family putative transporter -
  WHU03_RS06115 (WHU03_06115) sxy/tfoX 1220696..1221325 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU03_RS06120 (WHU03_06120) sulA 1221544..1222053 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU03_RS06125 (WHU03_06125) ompA 1222410..1223462 (+) 1053 WP_000750419.1 porin OmpA -
  WHU03_RS06130 (WHU03_06130) matP 1223537..1223989 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WHU03_RS06135 (WHU03_06135) ycbZ 1224175..1225935 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=873241 WHU03_RS06115 WP_000839153.1 1220696..1221325(-) (sxy/tfoX) [Escherichia coli strain Z1322HEC0002]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=873241 WHU03_RS06115 WP_000839153.1 1220696..1221325(-) (sxy/tfoX) [Escherichia coli strain Z1322HEC0002]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1