Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RCF35_RS12460 Genome accession   NZ_CP133277
Coordinates   2401853..2402137 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain NBNZ-0060     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396853..2407137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS12440 (RCF35_12440) - 2398097..2399005 (+) 909 WP_032874760.1 ketopantoate reductase family protein -
  RCF35_RS12445 (RCF35_12445) - 2399035..2400267 (-) 1233 WP_007409644.1 aminopeptidase -
  RCF35_RS12450 (RCF35_12450) - 2400368..2400502 (-) 135 WP_003154559.1 protein YkpC -
  RCF35_RS12455 (RCF35_12455) mreBH 2400574..2401581 (-) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  RCF35_RS12460 (RCF35_12460) abrB 2401853..2402137 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RCF35_RS12465 (RCF35_12465) - 2402310..2403614 (+) 1305 WP_032874761.1 ATP-binding protein -
  RCF35_RS12470 (RCF35_12470) - 2403616..2404443 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  RCF35_RS12475 (RCF35_12475) ktrC 2404484..2405149 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  RCF35_RS12480 (RCF35_12480) ade 2405298..2407031 (+) 1734 WP_032874763.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=873216 RCF35_RS12460 WP_003154557.1 2401853..2402137(+) (abrB) [Bacillus velezensis strain NBNZ-0060]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=873216 RCF35_RS12460 WP_003154557.1 2401853..2402137(+) (abrB) [Bacillus velezensis strain NBNZ-0060]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543