Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RCF35_RS12250 Genome accession   NZ_CP133277
Coordinates   2365484..2365948 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain NBNZ-0060     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2360484..2370948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS12230 (RCF35_12230) - 2360965..2362785 (+) 1821 WP_032874722.1 PAS domain-containing protein -
  RCF35_RS12235 (RCF35_12235) - 2362766..2363979 (-) 1214 Protein_2350 aminotransferase A -
  RCF35_RS12240 (RCF35_12240) - 2364180..2364341 (-) 162 WP_007409608.1 hypothetical protein -
  RCF35_RS12245 (RCF35_12245) cheV 2364530..2365441 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  RCF35_RS12250 (RCF35_12250) kre 2365484..2365948 (-) 465 WP_003154622.1 YkyB family protein Regulator
  RCF35_RS12255 (RCF35_12255) - 2366071..2367363 (-) 1293 WP_007611093.1 MFS transporter -
  RCF35_RS12260 (RCF35_12260) - 2367439..2367933 (-) 495 WP_087920795.1 L,D-transpeptidase family protein -
  RCF35_RS12265 (RCF35_12265) - 2368008..2368871 (-) 864 WP_032874726.1 metallophosphoesterase -
  RCF35_RS12270 (RCF35_12270) fadH 2369015..2369779 (+) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  RCF35_RS12275 (RCF35_12275) - 2369893..2370441 (+) 549 WP_032874729.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=873214 RCF35_RS12250 WP_003154622.1 2365484..2365948(-) (kre) [Bacillus velezensis strain NBNZ-0060]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=873214 RCF35_RS12250 WP_003154622.1 2365484..2365948(-) (kre) [Bacillus velezensis strain NBNZ-0060]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929