Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RCF35_RS05425 Genome accession   NZ_CP133277
Coordinates   1053816..1054106 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain NBNZ-0060     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048816..1059106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF35_RS05385 (RCF35_05385) darA 1048833..1049162 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  RCF35_RS05390 (RCF35_05390) - 1049175..1049615 (+) 441 WP_004264730.1 YaaR family protein -
  RCF35_RS05395 (RCF35_05395) holB 1049627..1050616 (+) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  RCF35_RS05400 (RCF35_05400) ricT 1050619..1051446 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  RCF35_RS05405 (RCF35_05405) yabA 1051461..1051820 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  RCF35_RS05410 (RCF35_05410) - 1051881..1052624 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RCF35_RS05415 (RCF35_05415) - 1052611..1052910 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  RCF35_RS05420 (RCF35_05420) rsmI 1052885..1053766 (+) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RCF35_RS05425 (RCF35_05425) abrB 1053816..1054106 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  RCF35_RS05430 (RCF35_05430) metG 1054590..1056581 (+) 1992 WP_022552471.1 methionine--tRNA ligase -
  RCF35_RS05435 (RCF35_05435) - 1056658..1057425 (+) 768 WP_032872179.1 TatD family hydrolase -
  RCF35_RS05440 (RCF35_05440) - 1057560..1058885 (+) 1326 WP_087920785.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=873187 RCF35_RS05425 WP_169510469.1 1053816..1054106(-) (abrB) [Bacillus velezensis strain NBNZ-0060]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=873187 RCF35_RS05425 WP_169510469.1 1053816..1054106(-) (abrB) [Bacillus velezensis strain NBNZ-0060]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979