Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RCG25_RS19730 Genome accession   NZ_CP133269
Coordinates   3928978..3930795 (-) Length   605 a.a.
NCBI ID   WP_308080525.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3923978..3935795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS19700 (RCG25_19700) - 3924535..3925329 (-) 795 WP_308080519.1 NAD kinase -
  RCG25_RS19705 (RCG25_19705) - 3925376..3926014 (-) 639 WP_308080520.1 GTP pyrophosphokinase family protein -
  RCG25_RS19710 (RCG25_19710) - 3926033..3926392 (-) 360 WP_308080521.1 hypothetical protein -
  RCG25_RS19715 (RCG25_19715) - 3926511..3927095 (+) 585 WP_308080522.1 CYTH domain-containing protein -
  RCG25_RS19720 (RCG25_19720) - 3927195..3927605 (+) 411 WP_308080523.1 globin -
  RCG25_RS19725 (RCG25_19725) - 3927577..3928467 (+) 891 WP_374121008.1 ClpXP adapter SpxH family protein -
  RCG25_RS19730 (RCG25_19730) pepF 3928978..3930795 (-) 1818 WP_308080525.1 oligoendopeptidase F Regulator
  RCG25_RS19735 (RCG25_19735) - 3930924..3932129 (-) 1206 WP_308080526.1 competence protein CoiA family protein -
  RCG25_RS19740 (RCG25_19740) cls 3932371..3933882 (-) 1512 WP_308084227.1 cardiolipin synthase -
  RCG25_RS19745 (RCG25_19745) mecA 3934117..3934788 (-) 672 WP_308084228.1 adaptor protein MecA -
  RCG25_RS19750 (RCG25_19750) spxA 3935068..3935463 (-) 396 WP_308080527.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69546.96 Da        Isoelectric Point: 4.9007

>NTDB_id=873152 RCG25_RS19730 WP_308080525.1 3928978..3930795(-) (pepF) [Neobacillus sp. PS2-9]
MSNETAVKSLPTRNDIPVEDTWKLEDIFASDQDWENEFQDVKNQISGIKEYEGKLGESAETLYKALQFQDRLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAGSQLAFIVPEILSIEEEKVASFLNEKPELKLYEHAIAEINLQRAHVLTAE
QEALLAEASEIMNASSNTFGMLNNADIEFPSIKDENGEEVEITHGRYIRFLESGDQRVRRDAFKAVYKTYGSFQNTFSST
LSGNVKKDNFNARIRKYDSARHAALAANNIPESVYDNLVNTVSENLHLLHRYVKLRKKVLGLNELHMYDLYTPLVKDVKM
DIKYEEAKDIIIKGLAPLGEEYGEILKTGFESRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTAEALTESYYALNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIDF
LSAGSSDYPIEVLKKAGVDMTSAEPVKNACKVFEEKLNELEKLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=873152 RCG25_RS19730 WP_308080525.1 3928978..3930795(-) (pepF) [Neobacillus sp. PS2-9]
ATGTCAAATGAAACTGCCGTAAAATCACTACCAACTAGAAATGATATCCCCGTAGAGGATACTTGGAAATTAGAGGATAT
TTTTGCTAGTGATCAGGACTGGGAGAACGAATTTCAAGACGTCAAAAATCAAATTTCTGGAATTAAAGAATATGAAGGAA
AATTAGGTGAAAGTGCAGAGACACTTTATAAAGCTCTTCAATTCCAAGATAGGCTATTGGAACGGATTGGAAAGCTTTAT
ACATATTCACATATGCGCTACGATCAGGATACTACTAATTCCTTCTATCAGGGTTTAGATGATCGGATGAAAAATCTTTA
TTCCCAGGCAGGTAGTCAGCTAGCATTTATTGTACCTGAAATCCTTTCTATCGAGGAAGAGAAGGTTGCAAGTTTCTTGA
ATGAGAAACCAGAGCTAAAACTTTATGAACACGCCATTGCTGAGATTAATCTGCAGCGTGCACATGTCCTAACTGCTGAA
CAAGAAGCATTACTAGCTGAAGCAAGCGAAATAATGAATGCTTCTAGTAATACTTTTGGCATGCTTAATAACGCAGACAT
AGAATTCCCTTCTATTAAAGATGAAAATGGGGAAGAGGTTGAAATTACCCATGGTCGTTATATTCGTTTCTTGGAAAGTG
GGGACCAGCGTGTAAGACGTGATGCCTTTAAAGCCGTGTATAAGACGTATGGAAGTTTTCAAAATACCTTTTCTAGTACA
TTAAGCGGCAATGTAAAAAAGGACAATTTCAATGCACGGATCAGAAAATATGATTCAGCTAGACATGCAGCACTGGCAGC
AAACAATATTCCAGAAAGTGTATACGATAATCTGGTAAATACAGTTAGTGAAAATCTGCATCTATTGCATCGGTATGTGA
AGCTTCGGAAAAAAGTCTTAGGCTTAAATGAGCTTCATATGTATGATCTTTATACACCACTTGTGAAAGATGTGAAAATG
GACATTAAGTATGAAGAAGCAAAGGATATAATCATAAAGGGTTTAGCTCCGTTAGGTGAGGAGTATGGCGAAATCCTGAA
GACAGGTTTTGAAAGCCGCTGGGTAGATGTTCATGAGAATAAAGGAAAGCGGAGTGGTGCTTATTCTTCGGGTGCTTATG
GGACACATCCATACATCTTAATGAACTGGCAAGACAACGTGAATAACTTATTTACCCTTGCGCATGAATTTGGTCATTCG
GTGCATAGCTATTATACACGCAAATCACAGCCGTATCCGTATGGAAACTATTCTATTTTTGTTGCAGAGGTTGCCTCAAC
CTGTAATGAAGCTTTACTTAATGATTATTTATTAAAGACTATTGATGACGAGCAAAAGCGGATTTATCTTCTAAATCACT
ACCTAGAAGGTTTTAGAGGTACGGTTTTCAGACAAACCATGTTTGCTGAATTCGAACATTTAATCCATCAAAAAGCTCAA
AACAATGAGGCTTTAACAGCTGAGGCGTTAACTGAAAGCTATTACGCTTTGAACAAGAAATATTTTGGTGAAGAAGATAT
CGTCATTGACGAGGAAATTGGTTTGGAGTGGGCAAGAATCCCACATTTCTATTACAATTATTATGTCTATCAATATGCAA
CAGGTTTCAGCGCTGCAACTGCGCTCAGCAAGCAAATCTTAGAAGAAGGAGAGCCTGCTGTCAAACGTTATATCGATTTC
CTAAGTGCCGGAAGTTCTGATTATCCAATTGAAGTGTTAAAGAAGGCAGGAGTCGATATGACAAGTGCAGAGCCAGTTAA
AAATGCATGTAAAGTATTTGAAGAAAAATTAAATGAGCTAGAAAAATTATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.171

96.86

0.486