Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RCG25_RS08555 Genome accession   NZ_CP133269
Coordinates   1724246..1725934 (+) Length   562 a.a.
NCBI ID   WP_308083245.1    Uniprot ID   -
Organism   Neobacillus sp. PS2-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719246..1730934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG25_RS08530 (RCG25_08530) - 1719585..1719818 (+) 234 WP_308083240.1 exodeoxyribonuclease VII small subunit -
  RCG25_RS08535 (RCG25_08535) - 1719822..1720715 (+) 894 WP_308083241.1 farnesyl diphosphate synthase -
  RCG25_RS08540 (RCG25_08540) dxs 1720896..1722791 (+) 1896 WP_308083242.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RCG25_RS08545 (RCG25_08545) - 1722795..1723634 (+) 840 WP_308083243.1 TlyA family RNA methyltransferase -
  RCG25_RS08550 (RCG25_08550) ahrC 1723781..1724230 (+) 450 WP_308083244.1 transcriptional regulator AhrC/ArgR -
  RCG25_RS08555 (RCG25_08555) recN 1724246..1725934 (+) 1689 WP_308083245.1 DNA repair protein RecN Machinery gene
  RCG25_RS08560 (RCG25_08560) spoIVB 1726059..1727348 (+) 1290 WP_308083246.1 SpoIVB peptidase -
  RCG25_RS08565 (RCG25_08565) spo0A 1727862..1728653 (+) 792 WP_308083247.1 sporulation transcription factor Spo0A -
  RCG25_RS08570 (RCG25_08570) - 1728833..1730068 (+) 1236 WP_308083248.1 ATP-binding protein -
  RCG25_RS08575 (RCG25_08575) - 1730124..1730267 (-) 144 WP_308083249.1 YycC family protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63566.13 Da        Isoelectric Point: 5.0022

>NTDB_id=873140 RCG25_RS08555 WP_308083245.1 1724246..1725934(+) (recN) [Neobacillus sp. PS2-9]
MLAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQLDDPNHPIISK
SLEFGIEIEEGMVVLRRDISRTGKSVCRINGKLVTISTLREIGSTLVDIHGQHEHQELMDETIHLSLLDQFGSEEIAGSH
AEYLDVFRRYEQTLQKLKSLSENDQQTAHRLDLIQFQLDEIQKANLKLHEDEELSEERRKLGNFERTFEAIQSSYTALHG
EQRGLDWLSMVMGYLEDAAALDTTYKDIFEAVSNSYYQLEDAARTLRNELDGLEYDPQRLNEIEDRLNEINQLKRKYGKT
INDIVEYAAKIEEEIETLQNKETHISELEKELSSIKKDLILEAKQLSEIRHKWADKLTKLIHKELKELYMAKTIFEMRFE
TDFEHFSKTGVDHVEFYISTNPGEPLKPLSRVASGGELSRIMLALKSIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVASGSQVLCISHLPQVAAMADTHLFISKVITGGRTKTYVTSLNVEEKIKEIGRMISGAEITDLTKKHAEELIFLAGENK
KT

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=873140 RCG25_RS08555 WP_308083245.1 1724246..1725934(+) (recN) [Neobacillus sp. PS2-9]
TTGTTAGCAGAACTATCAATAAAAAACTTTGCGATAATCGAATCCCTTTCCATTTCCTTTGAAAAGGGATTAACTGTATT
AACCGGAGAAACAGGCGCAGGAAAATCTATAATCATTGATGCCATCCATTTATTGGTGGGCGGCAGAGGATCCGCTGAAT
TTGTGCGTCATGGTGAGGAGAAGGCTGAAATAGAGGGGCTTTTTCAACTAGATGATCCAAATCATCCAATTATTTCGAAA
TCATTAGAATTTGGTATAGAAATTGAAGAAGGTATGGTGGTTCTAAGACGAGACATATCACGAACCGGAAAAAGTGTTTG
TCGAATCAATGGAAAGCTTGTTACCATATCAACCCTTCGTGAAATAGGTTCCACTCTTGTAGATATTCATGGGCAACATG
AACATCAAGAGTTAATGGATGAAACGATACATTTATCATTGCTCGATCAGTTTGGTTCCGAGGAAATTGCAGGTTCACAT
GCAGAATATCTAGATGTCTTTCGAAGGTACGAGCAAACACTTCAAAAGCTAAAGTCATTAAGTGAGAATGATCAACAAAC
TGCACACCGACTAGATTTGATTCAATTTCAATTAGACGAAATTCAAAAAGCCAATCTAAAACTTCATGAAGATGAAGAGC
TTTCAGAAGAAAGAAGAAAGTTAGGGAATTTTGAAAGGACGTTTGAGGCCATCCAATCGAGTTATACGGCCTTGCATGGG
GAGCAGCGAGGACTAGACTGGCTAAGTATGGTCATGGGATACCTAGAAGATGCTGCGGCGCTAGACACAACGTATAAAGA
TATATTTGAAGCTGTTTCGAATAGCTATTACCAGCTAGAAGATGCTGCGAGAACTTTACGAAATGAACTGGATGGGTTAG
AATACGATCCGCAAAGGTTAAATGAAATTGAGGATCGACTAAATGAAATTAACCAGTTAAAACGTAAATATGGTAAAACG
ATTAATGATATTGTTGAATATGCAGCAAAGATTGAAGAAGAAATTGAAACCTTACAGAACAAAGAAACTCATATTTCTGA
ATTAGAAAAAGAATTATCTTCCATCAAAAAAGATCTGATTCTTGAGGCTAAGCAGTTATCTGAAATCCGTCATAAGTGGG
CAGATAAACTTACGAAGCTTATTCATAAGGAATTGAAGGAATTATACATGGCCAAGACTATATTTGAAATGCGGTTTGAA
ACGGATTTTGAGCATTTCTCTAAAACAGGAGTGGACCATGTGGAATTTTATATTTCGACTAACCCTGGTGAGCCACTGAA
GCCTTTGTCACGGGTTGCTTCAGGGGGAGAATTATCAAGGATTATGTTGGCCCTCAAGAGTATTTTTTCTCAACACCAAG
GTGTTACCTCTATTATTTTTGATGAGGTAGATACCGGTGTCAGCGGAAGAGTAGCTCAATCCATCGCAGAAAAGATTTAC
AAGGTAGCATCTGGTTCACAAGTTTTATGTATTTCTCATTTACCTCAAGTAGCTGCCATGGCAGATACTCATTTGTTTAT
TTCAAAGGTTATTACTGGAGGAAGAACAAAAACTTATGTAACATCATTGAATGTTGAAGAGAAGATTAAAGAAATTGGCA
GAATGATTTCTGGAGCGGAAATTACCGATCTTACGAAGAAACACGCTGAAGAATTAATATTTTTAGCAGGTGAAAATAAA
AAAACTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.069

100

0.616