Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RCG17_RS19695 Genome accession   NZ_CP133268
Coordinates   3881271..3883091 (+) Length   606 a.a.
NCBI ID   WP_308171783.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3876271..3888091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS19675 (RCG17_19675) spxA 3876868..3877263 (+) 396 WP_308171780.1 transcriptional regulator SpxA -
  RCG17_RS19680 (RCG17_19680) mecA 3877566..3878231 (+) 666 WP_308171781.1 adaptor protein MecA -
  RCG17_RS19685 (RCG17_19685) cls 3878352..3879824 (+) 1473 WP_374120973.1 cardiolipin synthase -
  RCG17_RS19690 (RCG17_19690) - 3879925..3881121 (+) 1197 WP_308171782.1 competence protein CoiA family protein -
  RCG17_RS19695 (RCG17_19695) pepF 3881271..3883091 (+) 1821 WP_308171783.1 oligoendopeptidase F Regulator
  RCG17_RS19700 (RCG17_19700) - 3883127..3883300 (-) 174 WP_308171784.1 hypothetical protein -
  RCG17_RS19705 (RCG17_19705) - 3883486..3884919 (+) 1434 WP_308171785.1 transposase -
  RCG17_RS19710 (RCG17_19710) - 3885189..3886049 (-) 861 WP_308171786.1 ClpXP adapter SpxH family protein -
  RCG17_RS19715 (RCG17_19715) - 3886046..3886453 (-) 408 WP_308171787.1 globin -
  RCG17_RS19720 (RCG17_19720) - 3886609..3887211 (-) 603 WP_308171788.1 lytic transglycosylase domain-containing protein -
  RCG17_RS19725 (RCG17_19725) - 3887227..3887808 (-) 582 WP_308171789.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69753.41 Da        Isoelectric Point: 4.8511

>NTDB_id=873112 RCG17_RS19695 WP_308171783.1 3881271..3883091(+) (pepF) [Neobacillus sp. PS3-12]
MANEAAVKSLPVRSEIPVEETWRLEDIFPSDQEWEKEFQDVKNMIPEVKKFEGKLGESADTLYQALDEQNQLLERIGKLY
AYSHMRYDQDTTNSFYQGLDDRMKSLYSQAASQLAYIVPEILSIDEGKINEFLKQKSELQLYKHALEELNLQRPHVLSAE
MEALLAEAGEIMNASSNTFGMLNNADLQFPTIKDENGNDVEVTHGRYSRFLESADQSIRHDAFKAVYDTYGKFRNTFAST
ISGNVKKDNFNARVRKYSSARQAALAGNNIPESVYDNLVKTVNENLPLLQRYIKLRKKVLGLKELHMYDLYTPLVKDVKM
EIKYDEAKEIVLKGLAPLGEQYQQILKEGFENRWVDIHENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLAHELGHS
VHSYFTRKTQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEYEHLIHQKAQ
NNEALTADLLTNEYYALNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVNRYIKE
FLSAGSSDYPIEVLKKAGVDMNSSEPISNACKVFEEKLNEMEQLLS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=873112 RCG17_RS19695 WP_308171783.1 3881271..3883091(+) (pepF) [Neobacillus sp. PS3-12]
ATGGCTAATGAGGCAGCAGTAAAGTCACTTCCAGTCAGAAGTGAAATACCCGTAGAGGAAACGTGGAGATTAGAGGATAT
TTTTCCAAGTGACCAAGAATGGGAAAAGGAATTTCAAGATGTCAAAAACATGATCCCAGAAGTAAAGAAATTCGAAGGGA
AACTTGGTGAGAGCGCTGATACTCTCTATCAAGCTCTTGATGAGCAAAATCAACTGCTTGAGAGAATTGGGAAACTTTAT
GCTTATTCACATATGAGATACGATCAAGACACAACGAATTCATTTTATCAAGGGCTCGATGACAGGATGAAGAGCCTGTA
TTCACAAGCTGCCAGTCAGTTAGCCTATATTGTACCTGAAATCCTTTCCATTGATGAAGGGAAAATAAATGAATTTTTAA
AGCAAAAATCAGAGCTACAATTATATAAACATGCCCTTGAAGAACTTAATTTACAACGGCCGCATGTTCTTTCCGCTGAA
ATGGAAGCCTTATTAGCAGAAGCAGGGGAAATAATGAATGCTTCTAGCAATACTTTTGGCATGTTAAATAACGCTGATTT
GCAGTTCCCGACGATTAAAGATGAAAATGGGAATGACGTCGAGGTTACCCATGGAAGATATAGTCGTTTCCTTGAAAGTG
CAGACCAGAGCATTCGTCATGATGCGTTTAAAGCTGTATATGATACTTATGGGAAATTCCGCAATACATTTGCAAGTACG
ATAAGCGGGAATGTAAAGAAAGACAACTTTAATGCAAGAGTGAGAAAGTATAGCTCAGCAAGACAAGCAGCACTTGCCGG
AAACAATATTCCTGAAAGTGTTTATGATAACCTTGTTAAAACCGTCAATGAAAATCTTCCATTATTGCAACGCTATATTA
AGCTGCGCAAAAAAGTTTTGGGCCTGAAAGAGCTTCATATGTATGATTTATATACACCGCTTGTTAAAGATGTAAAAATG
GAGATTAAATACGACGAAGCAAAAGAAATCGTGTTAAAAGGACTTGCCCCATTAGGTGAACAATACCAGCAGATTTTAAA
AGAAGGGTTTGAAAACCGCTGGGTTGATATTCATGAAAATAAAGGAAAGCGCAGTGGTGCCTATTCATCTGGAGCATATG
GAACAAATCCATATATTCTTTTAAACTGGCAGGACAATGTGAATAATCTGTTTACATTAGCCCATGAATTAGGACATTCC
GTTCATAGCTATTTCACTCGGAAAACGCAGCCATACCCATATGGAGATTATTCGATCTTCGTTGCGGAGGTTGCTTCCAC
CTGTAATGAAGCATTATTAAATGATTATTTGTTAAAAACGATTGATGATGAGCAAAAGCGGATTTATTTGTTAAATCATT
ATTTAGAAGGTTTTAGGGGGACTGTGTTCCGCCAAACGATGTTTGCGGAGTATGAGCATTTGATTCATCAAAAAGCTCAA
AATAATGAAGCCCTAACGGCAGATCTTTTAACAAATGAATATTATGCTCTGAACAAAAAGTATTTTGGTGAAGAAGATAT
TGTGATTGATGAAGAAATCGGCTTAGAATGGGCAAGAATTCCTCACTTTTATTACAATTATTATGTGTATCAGTATGCGA
CTGGTTTTAGTGCAGCAACAGCATTAAGCAAACAAATTTTAGAAGAAGGCGAGCCAGCCGTAAATCGCTATATTAAGGAA
TTCTTAAGTGCTGGAAGTTCTGACTACCCGATCGAAGTACTGAAAAAAGCTGGAGTTGATATGAACAGCTCCGAACCAAT
CAGCAACGCCTGCAAAGTATTTGAAGAAAAACTAAACGAAATGGAACAACTGTTATCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.58

98.185

0.487