Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | RCG17_RS05065 | Genome accession | NZ_CP133268 |
| Coordinates | 975607..976686 (+) | Length | 359 a.a. |
| NCBI ID | WP_308174171.1 | Uniprot ID | - |
| Organism | Neobacillus sp. PS3-12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 970607..981686
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCG17_RS05050 (RCG17_05050) | gcvT | 971545..972645 (-) | 1101 | WP_308174169.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RCG17_RS05055 (RCG17_05055) | - | 973053..974750 (+) | 1698 | WP_308174170.1 | SNF2-related protein | - |
| RCG17_RS05060 (RCG17_05060) | - | 974719..975509 (+) | 791 | Protein_985 | YqhG family protein | - |
| RCG17_RS05065 (RCG17_05065) | comGA | 975607..976686 (+) | 1080 | WP_308174171.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RCG17_RS05070 (RCG17_05070) | comGB | 976670..977704 (+) | 1035 | WP_308174172.1 | competence type IV pilus assembly protein ComGB | - |
| RCG17_RS05075 (RCG17_05075) | comGC | 977722..978027 (+) | 306 | WP_308174173.1 | competence type IV pilus major pilin ComGC | - |
| RCG17_RS05080 (RCG17_05080) | comGD | 978024..978461 (+) | 438 | WP_308174174.1 | competence type IV pilus minor pilin ComGD | - |
| RCG17_RS05085 (RCG17_05085) | - | 978445..978783 (+) | 339 | WP_308174175.1 | hypothetical protein | - |
| RCG17_RS05090 (RCG17_05090) | comGF | 978731..979207 (+) | 477 | WP_308174176.1 | competence type IV pilus minor pilin ComGF | - |
| RCG17_RS05095 (RCG17_05095) | comGG | 979204..979587 (+) | 384 | WP_308174177.1 | competence type IV pilus minor pilin ComGG | - |
| RCG17_RS05100 (RCG17_05100) | - | 979677..979862 (+) | 186 | WP_308174178.1 | YqzE family protein | - |
| RCG17_RS05105 (RCG17_05105) | - | 980055..980756 (+) | 702 | WP_308174179.1 | helix-turn-helix domain-containing protein | - |
| RCG17_RS05110 (RCG17_05110) | - | 980850..981095 (+) | 246 | WP_308174180.1 | DUF2626 domain-containing protein | - |
Sequence
Protein
Download Length: 359 a.a. Molecular weight: 40620.99 Da Isoelectric Point: 7.7617
>NTDB_id=873075 RCG17_RS05065 WP_308174171.1 975607..976686(+) (comGA) [Neobacillus sp. PS3-12]
MFFIVSATEILANRIISDAVRNQATDIHIIPRRTDTLIQFRLTNKLIPRLSLPIEDCDRLISHFKFTANMDIGERRRPQN
GAFICEINGELLGLRLSTLPSNSRESLVIRLLPQQEQIPFHQLSLFPLMTRKLLALLKHAHGLIIFTGPTGSGKSTTLYS
LLNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGITYATGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVL
TTMHTRDAKGAVYRLHEFGANWLEVEQTLVAVTAQRLVELTCPFCEDECTPFCYTEGRWKRASVFELLSGKNLHLAMKEA
KGANVDLNYRTLKDVIRKGIALGYIKESEYERLVYDETT
MFFIVSATEILANRIISDAVRNQATDIHIIPRRTDTLIQFRLTNKLIPRLSLPIEDCDRLISHFKFTANMDIGERRRPQN
GAFICEINGELLGLRLSTLPSNSRESLVIRLLPQQEQIPFHQLSLFPLMTRKLLALLKHAHGLIIFTGPTGSGKSTTLYS
LLNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGITYATGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVL
TTMHTRDAKGAVYRLHEFGANWLEVEQTLVAVTAQRLVELTCPFCEDECTPFCYTEGRWKRASVFELLSGKNLHLAMKEA
KGANVDLNYRTLKDVIRKGIALGYIKESEYERLVYDETT
Nucleotide
Download Length: 1080 bp
>NTDB_id=873075 RCG17_RS05065 WP_308174171.1 975607..976686(+) (comGA) [Neobacillus sp. PS3-12]
GTGTTTTTTATTGTAAGCGCTACAGAAATATTAGCCAATCGAATTATCTCAGATGCCGTTAGAAACCAAGCAACAGATAT
TCACATTATTCCTCGAAGAACAGACACACTCATCCAATTCCGTTTAACAAACAAGTTAATTCCTCGTTTATCACTGCCAA
TTGAAGATTGTGACCGACTTATCTCCCATTTTAAATTCACAGCTAATATGGATATTGGCGAAAGAAGACGTCCGCAGAAT
GGTGCCTTTATTTGCGAAATCAACGGTGAGTTGCTTGGACTGAGACTCTCCACTCTGCCCTCCAACAGTCGAGAAAGCCT
CGTCATTAGGTTATTGCCGCAACAAGAACAAATCCCCTTCCATCAGCTATCCTTATTCCCATTAATGACCAGAAAGTTGC
TTGCACTTCTCAAACATGCCCATGGCTTAATTATTTTCACAGGTCCCACTGGAAGCGGAAAATCAACTACCCTCTACTCT
CTTTTAAATGAAACTGCACACCTTTTTCACCGTAATGTCATTACCCTTGAAGATCCAATCGAAAAAAATTATGATTCCGT
ACTACAAGTGCAAGTGAACGAAAAAGCAGGCATCACGTATGCAACTGGTTTAAAAGCGATCTTACGACACGACCCAGATA
TTATCATGGTTGGGGAAATCAGGGATAGCGAAACAGCTAAAATTGCTGTACGTGCTGCCCTAACCGGTCACCTTGTCTTG
ACAACCATGCACACTAGGGATGCCAAGGGGGCTGTTTATCGTCTGCATGAATTTGGCGCCAATTGGCTTGAAGTCGAACA
GACCTTGGTCGCAGTCACTGCACAAAGGCTGGTTGAGCTAACATGCCCTTTTTGTGAGGATGAGTGTACACCGTTTTGTT
ACACGGAGGGAAGATGGAAAAGAGCAAGTGTTTTTGAACTTTTATCAGGAAAAAATCTTCATTTGGCGATGAAGGAAGCA
AAGGGGGCTAATGTCGATCTAAATTATCGGACATTAAAGGATGTTATTCGAAAAGGAATTGCCCTCGGATATATTAAAGA
AAGTGAATACGAAAGGCTTGTATATGATGAAACAACGTAA
GTGTTTTTTATTGTAAGCGCTACAGAAATATTAGCCAATCGAATTATCTCAGATGCCGTTAGAAACCAAGCAACAGATAT
TCACATTATTCCTCGAAGAACAGACACACTCATCCAATTCCGTTTAACAAACAAGTTAATTCCTCGTTTATCACTGCCAA
TTGAAGATTGTGACCGACTTATCTCCCATTTTAAATTCACAGCTAATATGGATATTGGCGAAAGAAGACGTCCGCAGAAT
GGTGCCTTTATTTGCGAAATCAACGGTGAGTTGCTTGGACTGAGACTCTCCACTCTGCCCTCCAACAGTCGAGAAAGCCT
CGTCATTAGGTTATTGCCGCAACAAGAACAAATCCCCTTCCATCAGCTATCCTTATTCCCATTAATGACCAGAAAGTTGC
TTGCACTTCTCAAACATGCCCATGGCTTAATTATTTTCACAGGTCCCACTGGAAGCGGAAAATCAACTACCCTCTACTCT
CTTTTAAATGAAACTGCACACCTTTTTCACCGTAATGTCATTACCCTTGAAGATCCAATCGAAAAAAATTATGATTCCGT
ACTACAAGTGCAAGTGAACGAAAAAGCAGGCATCACGTATGCAACTGGTTTAAAAGCGATCTTACGACACGACCCAGATA
TTATCATGGTTGGGGAAATCAGGGATAGCGAAACAGCTAAAATTGCTGTACGTGCTGCCCTAACCGGTCACCTTGTCTTG
ACAACCATGCACACTAGGGATGCCAAGGGGGCTGTTTATCGTCTGCATGAATTTGGCGCCAATTGGCTTGAAGTCGAACA
GACCTTGGTCGCAGTCACTGCACAAAGGCTGGTTGAGCTAACATGCCCTTTTTGTGAGGATGAGTGTACACCGTTTTGTT
ACACGGAGGGAAGATGGAAAAGAGCAAGTGTTTTTGAACTTTTATCAGGAAAAAATCTTCATTTGGCGATGAAGGAAGCA
AAGGGGGCTAATGTCGATCTAAATTATCGGACATTAAAGGATGTTATTCGAAAAGGAATTGCCCTCGGATATATTAAAGA
AAGTGAATACGAAAGGCTTGTATATGATGAAACAACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
98.607 |
0.552 |
| pilB | Glaesserella parasuis strain SC1401 |
40.179 |
93.593 |
0.376 |