Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RCG17_RS04820 Genome accession   NZ_CP133268
Coordinates   928745..930442 (-) Length   565 a.a.
NCBI ID   WP_308174127.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 923745..935442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG17_RS04800 (RCG17_04800) - 924233..924472 (+) 240 WP_308174123.1 DUF2627 domain-containing protein -
  RCG17_RS04805 (RCG17_04805) - 925235..925963 (-) 729 WP_308174124.1 glycerophosphodiester phosphodiesterase -
  RCG17_RS04810 (RCG17_04810) spo0A 926128..926916 (-) 789 WP_308174125.1 sporulation transcription factor Spo0A -
  RCG17_RS04815 (RCG17_04815) spoIVB 927172..928461 (-) 1290 WP_308174126.1 SpoIVB peptidase -
  RCG17_RS04820 (RCG17_04820) recN 928745..930442 (-) 1698 WP_308174127.1 DNA repair protein RecN Machinery gene
  RCG17_RS04825 (RCG17_04825) ahrC 930456..930905 (-) 450 WP_308174128.1 transcriptional regulator AhrC/ArgR -
  RCG17_RS04830 (RCG17_04830) - 931036..931881 (-) 846 WP_308174129.1 TlyA family RNA methyltransferase -
  RCG17_RS04835 (RCG17_04835) dxs 931885..933777 (-) 1893 WP_308174130.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RCG17_RS04840 (RCG17_04840) - 933930..934823 (-) 894 WP_308174131.1 farnesyl diphosphate synthase -
  RCG17_RS04845 (RCG17_04845) - 934827..935060 (-) 234 WP_308174132.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63892.64 Da        Isoelectric Point: 5.3546

>NTDB_id=873074 RCG17_RS04820 WP_308174127.1 928745..930442(-) (recN) [Neobacillus sp. PS3-12]
MLSEISIKNFAIIEALSLSFNKGLTVLTGEAGAGKSIIIDAIHLLIGGRGSSEFVRHGEEKAEIEGLFNLDHDRHPCYQK
AQEFGIEIEEGMVILRRDISRSGKSVCRVNGKLVTISTLREIGSTLVDIHGQHEHQELMDDTHHLSLLDQFGYKEISVSL
SEYQTVFHRYEQTLGKLKALSENEQQTAHRLDLIQFQLDEIQKANLKLNEDDELLEEKRKLNNFERIFEAVQSSYTALQG
EQKGLDWVSLVMGHLEAAAALDEAYKNTYEAVANSYYLLEEAARSLRNEMDQLEYDPHRLNEIEDRLTEINHLKRKYGST
IEEILEYASKIEEEIETLQNKETYIDHLEKELSSLRKDLSLEANQLTDIRKKWAEKLTKLIHKELKELYMAKTVFEIHFE
PKGNFSRDGMDDVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIYK
VAINSQVLCISHLPQVAAMADTHLFISKVTKGGRTKSAVTPLKLNEKITEIGRMISGAEITDLTKKHAEELLQLAEENKK
SASLL

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=873074 RCG17_RS04820 WP_308174127.1 928745..930442(-) (recN) [Neobacillus sp. PS3-12]
TTGTTAAGTGAGATATCAATAAAAAACTTTGCTATCATCGAAGCTCTTTCACTTTCATTTAATAAAGGCTTGACTGTTTT
AACAGGAGAAGCCGGGGCAGGGAAGTCGATTATTATTGATGCGATTCACTTATTAATAGGGGGAAGAGGATCCTCCGAAT
TTGTTCGTCATGGAGAAGAAAAAGCGGAAATCGAGGGACTGTTTAATTTAGATCATGATCGTCATCCTTGTTATCAAAAA
GCACAAGAATTTGGAATTGAAATCGAGGAAGGCATGGTAATTTTGAGACGTGACATTTCGCGTTCAGGAAAAAGTGTTTG
CCGAGTCAATGGGAAACTGGTTACCATATCGACTCTCCGTGAAATAGGGTCGACATTAGTAGATATCCACGGCCAGCATG
AACATCAAGAATTAATGGATGACACACACCACTTGTCCTTACTTGATCAATTTGGATATAAGGAAATTTCCGTCTCTCTT
TCTGAATATCAAACTGTATTTCATCGATATGAACAGACCCTCGGTAAATTAAAAGCCTTAAGCGAGAACGAGCAGCAAAC
AGCCCATCGGCTTGATCTAATTCAATTCCAATTAGATGAAATTCAAAAGGCAAACTTGAAATTAAATGAAGACGATGAAC
TCCTTGAGGAAAAAAGAAAATTAAACAATTTCGAACGGATTTTCGAAGCTGTACAATCTAGTTATACTGCACTGCAAGGT
GAGCAAAAGGGCCTTGATTGGGTGAGTTTGGTCATGGGTCACCTTGAAGCAGCTGCAGCACTTGATGAAGCTTATAAAAA
TACGTACGAAGCTGTAGCAAATAGTTATTATTTACTTGAGGAAGCAGCAAGATCTCTTCGAAATGAAATGGACCAATTAG
AGTACGACCCGCATAGATTAAATGAAATTGAAGACAGGTTAACGGAGATTAATCATTTAAAAAGGAAATACGGAAGTACG
ATTGAGGAAATATTGGAATATGCTTCTAAAATTGAAGAGGAAATTGAAACACTGCAAAATAAAGAGACCTATATCGATCA
TTTAGAAAAGGAACTGTCCTCCTTAAGAAAAGATCTAAGCCTTGAAGCAAATCAATTAACGGATATTCGAAAGAAATGGG
CTGAAAAACTGACAAAGTTGATCCATAAAGAATTAAAAGAACTATATATGGCAAAAACTGTTTTTGAAATTCATTTTGAG
CCTAAAGGAAACTTTTCAAGGGATGGAATGGATGATGTAGAATTTTATATTTCTACCAACCCTGGTGAGCCGTTAAAACC
ACTTTCTAAGATCGCATCCGGAGGAGAGCTTTCAAGGATCATGTTGGCTTTAAAAAGTATTTTCTCCAAACATCAGGGAG
TAACGTCGATTATTTTCGATGAAGTTGATACAGGTGTAAGTGGCAGAGTGGCGCAAGCAATAGCCGAAAAGATTTACAAA
GTTGCGATCAACTCGCAAGTTTTGTGTATTTCGCATCTACCTCAAGTGGCTGCAATGGCTGATACTCATTTGTTTATTTC
AAAGGTTACAAAGGGCGGAAGAACCAAGTCAGCTGTAACACCACTTAAATTAAATGAAAAAATCACAGAAATTGGGCGCA
TGATTTCTGGCGCTGAAATAACCGATTTAACAAAAAAACATGCTGAAGAATTATTGCAGCTTGCTGAAGAAAATAAAAAA
AGTGCAAGCCTCTTGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.312

100

0.616