Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCG23_RS11325 Genome accession   NZ_CP133267
Coordinates   2184396..2185778 (-) Length   460 a.a.
NCBI ID   WP_308179766.1    Uniprot ID   A0AA51L5K9
Organism   Neobacillus sp. PS3-34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2179396..2190778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG23_RS11305 (RCG23_11305) ispF 2180781..2181269 (-) 489 WP_308179763.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RCG23_RS11310 (RCG23_11310) ispD 2181290..2181985 (-) 696 WP_308180038.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCG23_RS11315 (RCG23_11315) - 2182003..2183085 (-) 1083 WP_308179764.1 PIN/TRAM domain-containing protein -
  RCG23_RS11320 (RCG23_11320) disA 2183319..2184392 (-) 1074 WP_308179765.1 DNA integrity scanning diadenylate cyclase DisA -
  RCG23_RS11325 (RCG23_11325) radA 2184396..2185778 (-) 1383 WP_308179766.1 DNA repair protein RadA Machinery gene
  RCG23_RS11330 (RCG23_11330) clpC 2185975..2188405 (-) 2431 Protein_2213 ATP-dependent protease ATP-binding subunit ClpC -
  RCG23_RS11335 (RCG23_11335) - 2188419..2189490 (-) 1072 Protein_2214 protein arginine kinase -
  RCG23_RS11340 (RCG23_11340) - 2189493..2190041 (-) 549 WP_308179767.1 UvrB/UvrC motif-containing protein -
  RCG23_RS11345 (RCG23_11345) - 2190069..2190530 (-) 462 WP_308179768.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49670.16 Da        Isoelectric Point: 7.1764

>NTDB_id=873056 RCG23_RS11325 WP_308179766.1 2184396..2185778(-) (radA) [Neobacillus sp. PS3-34]
MAKRKTKFMCQECGYESAKWMGKCPGCGAWNKMVEEVEVTGMKRRGAFAHSEGGAAILSKPSPITAIETLSEPRIYTDLN
EMNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLAQKGHSVLYISGEESLRQTKLRADRLGISSENLLVYSETNLEE
ISRTIESTNPGFVIIDSIQTVFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRILEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVENPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPS
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLANQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRATDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWNGHKGIDLIGVSSVSEALKAALGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=873056 RCG23_RS11325 WP_308179766.1 2184396..2185778(-) (radA) [Neobacillus sp. PS3-34]
ATGGCAAAGAGAAAAACAAAGTTTATGTGTCAGGAGTGCGGCTATGAGTCTGCCAAGTGGATGGGGAAATGCCCTGGCTG
CGGTGCCTGGAATAAGATGGTTGAGGAAGTCGAAGTGACAGGGATGAAACGCCGGGGAGCGTTTGCCCATTCAGAAGGCG
GTGCAGCCATTCTCTCGAAGCCTTCTCCCATTACTGCTATTGAAACTTTAAGTGAACCAAGGATCTACACAGACCTTAAT
GAAATGAACAGGGTATTAGGCGGTGGGGTAGTAAAAGGTTCCTTGGTGTTGATTGGCGGGGATCCGGGTATCGGTAAATC
AACCCTCCTTTTGCAGGTATCATCCCAGCTGGCTCAGAAAGGGCATTCCGTTTTATATATTTCTGGGGAAGAATCACTTC
GCCAGACAAAGCTGCGCGCAGACCGTCTTGGCATTTCGTCAGAAAATCTGCTCGTTTATTCGGAAACCAATTTGGAAGAA
ATCAGCCGCACGATTGAAAGCACCAACCCTGGTTTTGTCATTATTGACTCCATTCAGACTGTTTTCCATCCTGAGGTGAC
CTCAGCGCCGGGGAGTGTCTCCCAGGTACGCGAATGTACGGCAGAATTGATGCGGATTGGAAAGACGAAGGGAATTGCCA
TTTTTATCGTTGGGCATGTGACGAAGGAAGGCTCTATCGCGGGTCCAAGGATTTTGGAGCATATGGTGGATACAGTGCTG
TATTTTGAGGGTGAACGGCATCATACGTACCGTATTTTAAGAGCGGTAAAGAACCGTTTTGGTTCGACGAATGAAATGGG
TATTTTTGAAATGAAAGAACTTGGTTTGGAGGAAGTAGAAAATCCATCTGAAATTTTCCTTGAGGAACGCTCACAGGGTG
CTGCAGGGTCAACGGTAGTAGCATCAATGGAAGGAACACGGCCAGTCCTGGTAGAAATACAGGCACTTATTTCTCCATCA
AGCTTTGGAAATCCAAGAAGAATGGCAACAGGCATTGACCATAACAGGGTCCCCTTGCTCATGGCCGTATTGGAAAAACG
GGTTGGGATGCTGCTTGCTAATCAGGATGCATATTTAAAGGTGGCAGGCGGGGTTAAGCTGGATGAACCAGCTATCGATT
TAGCCATTGCGGTCAGCATCGCGTCAAGCTTTAGGGATAAGCCGACTAGGGCAACGGACTGCATTATTGGTGAGGTCGGC
CTCACGGGAGAAGTCAGAAGGGTTTCACGTATTGAGCAGAGGGTGCAGGAAGCCGCAAAGCTGGGGTTTGAAAGAGTAAT
TTTGCCTGCCAACAATCTTGGTGGATGGAATGGGCATAAAGGGATTGACCTCATTGGGGTATCATCTGTAAGTGAGGCGT
TAAAAGCTGCATTAGGAGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-432)

AAA domain (AAA_25)

(79-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.007

100

0.772
  radA Streptococcus mitis NCTC 12261

61.656

99.783

0.615
  radA Streptococcus pneumoniae Rx1

61.656

99.783

0.615
  radA Streptococcus pneumoniae D39

61.656

99.783

0.615
  radA Streptococcus pneumoniae R6

61.656

99.783

0.615
  radA Streptococcus pneumoniae TIGR4

61.656

99.783

0.615
  radA Streptococcus mitis SK321

61.438

99.783

0.613