Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU61_RS08255 Genome accession   NZ_CP148573
Coordinates   1678338..1678967 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1322HEC0006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673338..1683967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU61_RS08235 (WHU61_08210) ycbZ 1673728..1675488 (-) 1761 WP_074524600.1 Lon protease family protein -
  WHU61_RS08240 (WHU61_08215) matP 1675674..1676126 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WHU61_RS08245 (WHU61_08220) ompA 1676201..1677253 (-) 1053 WP_000750419.1 porin OmpA -
  WHU61_RS08250 (WHU61_08225) sulA 1677610..1678119 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHU61_RS08255 (WHU61_08230) sxy/tfoX 1678338..1678967 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU61_RS08260 (WHU61_08235) yccS 1678930..1681092 (-) 2163 WP_000875044.1 YccS family putative transporter -
  WHU61_RS08265 (WHU61_08240) yccF 1681102..1681548 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WHU61_RS08270 (WHU61_08245) helD 1681671..1683725 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=873025 WHU61_RS08255 WP_000839153.1 1678338..1678967(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=873025 WHU61_RS08255 WP_000839153.1 1678338..1678967(+) (sxy/tfoX) [Escherichia coli strain Z1322HEC0006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1