Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCG20_RS11795 Genome accession   NZ_CP133266
Coordinates   2425225..2426607 (+) Length   460 a.a.
NCBI ID   WP_308180353.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2420225..2431607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS11775 (RCG20_11775) - 2420558..2421019 (+) 462 WP_308180349.1 CtsR family transcriptional regulator -
  RCG20_RS11780 (RCG20_11780) - 2421042..2421590 (+) 549 WP_308180350.1 UvrB/UvrC motif-containing protein -
  RCG20_RS11785 (RCG20_11785) - 2421592..2422665 (+) 1074 WP_308180351.1 protein arginine kinase -
  RCG20_RS11790 (RCG20_11790) clpC 2422678..2425119 (+) 2442 WP_308180352.1 ATP-dependent protease ATP-binding subunit ClpC -
  RCG20_RS11795 (RCG20_11795) radA 2425225..2426607 (+) 1383 WP_308180353.1 DNA repair protein RadA Machinery gene
  RCG20_RS11800 (RCG20_11800) - 2426956..2428044 (+) 1089 WP_308180354.1 PIN/TRAM domain-containing protein -
  RCG20_RS11805 (RCG20_11805) ispD 2428143..2428823 (+) 681 WP_308180355.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCG20_RS11810 (RCG20_11810) ispF 2428914..2429390 (+) 477 WP_308180356.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RCG20_RS11815 (RCG20_11815) gltX 2429549..2431012 (+) 1464 WP_308180357.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50022.46 Da        Isoelectric Point: 6.8347

>NTDB_id=873023 RCG20_RS11795 WP_308180353.1 2425225..2426607(+) (radA) [Neobacillus sp. PS3-40]
MAKRKTKFMCQECGYESPKWMGKCPGCGEWNKMVEEVEVTGSTRRGAFAHSQGGAAILSKPTPITSIETDTEPRILTDLN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLSQRGNKVLYISGEESLRQTKLRADRLGISSENLLVYSETNLDE
INRTIETTNPSIVIIDSIQTVFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRILEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVENPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAVDLAIAVSIASSFRDKPTRPTDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWKGPKEIELIGVSSVSEALKAALGE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=873023 RCG20_RS11795 WP_308180353.1 2425225..2426607(+) (radA) [Neobacillus sp. PS3-40]
ATGGCAAAAAGAAAAACAAAATTTATGTGCCAAGAATGCGGGTATGAGTCTCCGAAGTGGATGGGGAAATGTCCAGGCTG
TGGTGAATGGAATAAGATGGTTGAGGAAGTAGAAGTGACAGGATCAACAAGAAGAGGAGCTTTTGCACATTCACAAGGTG
GAGCTGCCATTTTATCCAAACCAACACCGATTACTTCAATTGAAACAGATACTGAACCAAGGATACTTACCGACTTGAAT
GAGTTAAACAGAGTCCTTGGGGGAGGAGTGGTCAAAGGTTCATTAGTTTTAATCGGGGGCGATCCAGGGATTGGTAAATC
TACACTTCTTTTGCAAGTTTCTTCACAATTATCACAAAGAGGAAATAAAGTTTTGTACATTTCTGGTGAAGAATCACTAC
GTCAAACAAAGCTTCGGGCAGACCGCTTAGGTATTTCCTCCGAAAATCTTCTGGTATATTCTGAAACAAATTTGGATGAA
ATTAATCGAACCATTGAAACTACCAATCCTAGCATTGTCATTATTGACTCTATTCAAACTGTTTTTCATCCAGAGGTAAC
TTCTGCACCAGGAAGTGTGTCACAAGTCCGTGAGTGCACAGCAGAATTGATGCGAATCGGAAAGACAAAGGGTATTGCTA
TTTTTATCGTCGGTCATGTAACAAAGGAAGGTTCCATTGCTGGACCAAGGATTTTGGAACATATGGTTGATACTGTTTTG
TATTTTGAAGGGGAACGCCATCATACGTATCGGATTTTACGAGCCGTAAAAAACCGCTTTGGTTCAACGAATGAAATGGG
AATTTTTGAAATGAAGGAATTTGGATTAGAAGAAGTTGAAAATCCTTCAGAAATTTTTCTTGAAGAGAGATCGCGTGGGG
CTGCTGGTTCAACTGTTGTTGCTTCTATGGAAGGGACACGACCAGTGCTAGTAGAAATTCAAGCGTTAATCTCCCCAACA
AGTTTTGGGAACCCTAGAAGAATGGCTACAGGAATTGATCATAACCGTGTTCCGCTCTTAATGGCTGTATTGGAAAAGAG
GGTAGGAATGCTTCTGCAAAACCAAGATGCTTATCTTAAGGTAGCTGGAGGCGTAAAGTTAGATGAACCAGCCGTTGACC
TTGCCATTGCAGTCAGTATTGCTTCAAGCTTTCGGGATAAGCCGACAAGACCAACAGATTGTATTATTGGAGAAGTTGGA
TTGACGGGAGAAGTTAGAAGAGTCTCGAGGATTGAGCAACGAGTTCAGGAGGCTGCAAAGCTTGGATTTGAAAGAGTCAT
ATTACCTGCCAATAATCTTGGAGGTTGGAAAGGGCCAAAAGAGATTGAACTGATTGGTGTTTCATCTGTTAGTGAGGCAT
TAAAAGCGGCATTGGGGGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.391

100

0.774
  radA Streptococcus mitis NCTC 12261

63.181

99.783

0.63
  radA Streptococcus pneumoniae Rx1

63.181

99.783

0.63
  radA Streptococcus pneumoniae D39

63.181

99.783

0.63
  radA Streptococcus pneumoniae R6

63.181

99.783

0.63
  radA Streptococcus pneumoniae TIGR4

63.181

99.783

0.63
  radA Streptococcus mitis SK321

62.963

99.783

0.628