Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RCG20_RS04860 Genome accession   NZ_CP133266
Coordinates   957351..959075 (-) Length   574 a.a.
NCBI ID   WP_308183118.1    Uniprot ID   -
Organism   Neobacillus sp. PS3-40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952351..964075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG20_RS04835 (RCG20_04835) - 952492..952674 (+) 183 WP_308183113.1 YycC family protein -
  RCG20_RS04840 (RCG20_04840) - 952941..953552 (+) 612 WP_308183114.1 hypothetical protein -
  RCG20_RS04845 (RCG20_04845) - 953796..954632 (+) 837 WP_308183115.1 CsxC family protein -
  RCG20_RS04850 (RCG20_04850) spo0A 954843..955634 (-) 792 WP_308183116.1 sporulation transcription factor Spo0A -
  RCG20_RS04855 (RCG20_04855) spoIVB 955914..957212 (-) 1299 WP_374120510.1 SpoIVB peptidase -
  RCG20_RS04860 (RCG20_04860) recN 957351..959075 (-) 1725 WP_308183118.1 DNA repair protein RecN Machinery gene
  RCG20_RS04865 (RCG20_04865) ahrC 959092..959541 (-) 450 WP_308183119.1 transcriptional regulator AhrC/ArgR -
  RCG20_RS04870 (RCG20_04870) - 959691..960533 (-) 843 WP_308183120.1 TlyA family RNA methyltransferase -
  RCG20_RS04875 (RCG20_04875) dxs 960537..962429 (-) 1893 WP_308184290.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RCG20_RS04880 (RCG20_04880) - 962707..963600 (-) 894 WP_308183121.1 farnesyl diphosphate synthase -
  RCG20_RS04885 (RCG20_04885) - 963604..963837 (-) 234 WP_308183122.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64914.06 Da        Isoelectric Point: 5.5166

>NTDB_id=872999 RCG20_RS04860 WP_308183118.1 957351..959075(-) (recN) [Neobacillus sp. PS3-40]
MLSELSIKNFAIIEALIISFEKGLTVLSGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQLDDIHHPCFSK
ALEFGIEIEDGMVVIRRDISRIGKSVCRINGKLVTISTLREIGSTLMDIHGQHEHQELMDETHHLSMLDQFGINEIASSL
QEYQTIFHRYEQTLHKLKHLTENDQQTAHRLDLIQFQFEEIQTANLKLNEDEELIEEKRKLSNFERIFEAIQSSYRGLQG
EQKGLDWISLVMGNLEDAAALDSAYKDVFEVVSNSFYMLEDATRLLRNDLDLLENDPHRLNEIEERLTEINQLKRKYGHT
IAEIVEYAAKIEEEIETLQNKETHIDQFEKELSSLRKDLNLEARQLTDVRKKWAEKLTKLIHNELKELYMAKTVFQISFE
PIGHFTKNGNDKVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIYK
VATNSQVLCISHLPQVAAMGDTHLLISKVTKGGRTKASVTSLTEIEKIGEIGRMISGVEITDLTKKHAEELLQLAKENKE
KSSISKPFKAKTEA

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=872999 RCG20_RS04860 WP_308183118.1 957351..959075(-) (recN) [Neobacillus sp. PS3-40]
TTGTTAAGTGAACTATCCATAAAAAACTTTGCGATTATTGAAGCACTTATAATCTCATTTGAAAAGGGCCTAACTGTCCT
GTCAGGTGAGACTGGGGCCGGAAAATCGATTATTATTGATGCAATCCATTTACTAGTAGGTGGGAGAGGTTCAGCAGAAT
TTGTCCGTCATGGTGAGGAGAAAGCTGAGATTGAAGGGCTATTTCAATTAGATGATATCCATCATCCATGTTTCTCAAAA
GCCTTGGAATTTGGGATAGAAATTGAGGATGGAATGGTTGTAATAAGACGAGACATTTCCAGAATAGGTAAAAGTGTTTG
TCGGATAAATGGAAAGCTTGTTACAATTTCAACACTTCGTGAAATTGGCTCTACACTTATGGATATTCATGGTCAACATG
AACATCAGGAATTAATGGATGAGACGCATCATTTATCAATGTTAGATCAATTTGGTATTAATGAAATTGCGTCATCGTTA
CAGGAATATCAAACAATCTTCCATCGTTATGAACAAACCTTACATAAGCTTAAACATTTAACGGAAAATGATCAACAGAC
AGCGCATCGCCTCGATTTAATTCAGTTTCAATTTGAAGAAATTCAAACTGCAAATTTAAAATTAAATGAAGATGAGGAGC
TTATTGAAGAAAAGCGAAAACTAAGTAATTTCGAAAGAATTTTTGAAGCTATCCAATCGAGTTATCGTGGTCTTCAAGGA
GAGCAAAAAGGGTTGGACTGGATAAGCCTAGTTATGGGAAATCTAGAGGATGCAGCAGCTCTAGATTCAGCATACAAAGA
CGTTTTTGAGGTGGTTTCAAATAGCTTCTATATGCTAGAGGATGCGACAAGGTTATTGAGAAATGATTTGGACCTTCTTG
AAAATGACCCGCATCGGTTAAATGAAATTGAGGAAAGATTAACCGAAATCAATCAATTAAAACGAAAATATGGCCATACT
ATTGCGGAAATAGTAGAATATGCTGCAAAAATTGAAGAGGAAATTGAAACATTACAAAATAAAGAAACACATATAGATCA
ATTTGAAAAAGAATTGTCATCTTTAAGAAAAGATTTAAATCTGGAAGCAAGGCAATTAACTGATGTTCGAAAAAAATGGG
CTGAAAAACTAACAAAGCTGATTCACAATGAATTAAAGGAACTGTATATGGCAAAAACAGTGTTTCAAATTAGCTTTGAG
CCTATTGGGCATTTTACTAAAAACGGCAATGATAAAGTGGAATTTTATATTTCAACAAATCCAGGCGAGCCTTTAAAGCC
ACTTTCAAAAATAGCTTCTGGTGGTGAATTATCGAGAATCATGCTTGCATTAAAAAGTATTTTCTCAAAACATCAGGGAG
TAACATCCATTATTTTTGACGAGGTAGATACGGGTGTTAGCGGTAGGGTTGCGCAGGCGATTGCTGAAAAAATTTATAAG
GTTGCAACCAATTCACAGGTGCTTTGTATTTCTCATTTACCTCAGGTTGCAGCAATGGGAGATACACATCTGCTAATATC
CAAAGTAACAAAAGGTGGGAGGACAAAAGCTTCTGTAACCTCATTAACAGAAATAGAAAAAATCGGGGAAATTGGAAGAA
TGATTTCAGGTGTTGAAATCACTGATTTAACCAAAAAACATGCGGAAGAATTACTGCAGCTAGCCAAAGAAAATAAAGAA
AAATCGTCGATTAGCAAGCCCTTTAAGGCAAAGACAGAGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.826

100

0.599