Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RCG19_RS16585 Genome accession   NZ_CP133265
Coordinates   3332253..3334073 (+) Length   606 a.a.
NCBI ID   WP_308108033.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3327253..3339073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG19_RS16565 (RCG19_16565) spxA 3327869..3328264 (+) 396 WP_166237606.1 transcriptional regulator SpxA -
  RCG19_RS16570 (RCG19_16570) mecA 3328543..3329214 (+) 672 WP_166238105.1 adaptor protein MecA -
  RCG19_RS16575 (RCG19_16575) cls 3329290..3330801 (+) 1512 WP_308108031.1 cardiolipin synthase -
  RCG19_RS16580 (RCG19_16580) - 3330908..3332113 (+) 1206 WP_308108032.1 competence protein CoiA family protein -
  RCG19_RS16585 (RCG19_16585) pepF 3332253..3334073 (+) 1821 WP_308108033.1 oligoendopeptidase F Regulator
  RCG19_RS16590 (RCG19_16590) - 3334737..3335600 (-) 864 WP_308108034.1 ClpXP adapter SpxH family protein -
  RCG19_RS16595 (RCG19_16595) - 3335597..3336004 (-) 408 WP_166237611.1 globin -
  RCG19_RS16600 (RCG19_16600) - 3336179..3336775 (-) 597 WP_308108035.1 CYTH domain-containing protein -
  RCG19_RS16605 (RCG19_16605) - 3336921..3337280 (+) 360 WP_166237613.1 hypothetical protein -
  RCG19_RS16610 (RCG19_16610) - 3337302..3337940 (+) 639 WP_166237614.1 GTP pyrophosphokinase family protein -
  RCG19_RS16615 (RCG19_16615) - 3337989..3338783 (+) 795 WP_166237615.1 NAD kinase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69834.27 Da        Isoelectric Point: 4.9463

>NTDB_id=872988 RCG19_RS16585 WP_308108033.1 3332253..3334073(+) (pepF) [Neobacillus sp. OS1-2]
MANETAIKSLPSRSDIAVEDTWKLEDIFASDQEWEKEFQEVKSQISGIKEYEGKLDENAETLYKALQFQDQLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASQLAFIVPEILSIDESKVLSFLKEKQELKLYEHAIEEINQQRPHVLSAE
QEALLAEAGEVMDASSNTFGMLNNADIKFPTIKDTNGEEVEVTHGRYSRFLESSDQRVRHDAFKAVYKTYGDFKNTFSST
LSGNVKKDNFNARVRKYDSARHAALSANNIPESVYDNLVNTVTDNLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVKM
EIKYDEAKDLVIKGLAPLGEEYSKILKEGFENRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHNYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADALTEAYYALNKKYFGEEDIIIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEQ
FLSAGSSDYPIEVLKKAGVDMTSADPIKNACKVFEEKLSELEQLLS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=872988 RCG19_RS16585 WP_308108033.1 3332253..3334073(+) (pepF) [Neobacillus sp. OS1-2]
ATGGCAAACGAAACGGCTATAAAATCGCTCCCCTCAAGAAGTGACATCGCTGTGGAAGACACGTGGAAATTAGAAGATAT
TTTTGCAAGTGATCAGGAATGGGAAAAAGAGTTTCAAGAGGTAAAGAGTCAAATTTCCGGGATAAAAGAATATGAAGGTA
AATTAGACGAAAATGCAGAAACGCTTTATAAGGCCCTTCAATTTCAAGATCAATTGTTAGAGCGGATTGGCAAACTTTAT
ACATACTCACATATGCGTTATGACCAGGACACGACAAACTCCTTTTACCAGGGGTTGGATGATAGAATGAAAAATCTATA
CTCACAAGCAGCGAGCCAGCTGGCATTTATTGTTCCAGAAATACTTTCGATTGATGAAAGTAAAGTTTTGAGCTTTTTGA
AAGAGAAACAAGAGCTTAAGCTTTATGAACATGCGATTGAAGAAATTAATCAACAACGACCGCATGTACTAAGTGCTGAG
CAGGAAGCCTTGTTGGCTGAGGCAGGAGAAGTGATGGATGCTTCAAGCAACACTTTCGGTATGTTGAACAATGCGGATAT
TAAGTTTCCAACAATTAAAGATACGAACGGGGAAGAGGTTGAAGTTACCCATGGACGGTACAGTAGGTTCTTAGAAAGCA
GTGACCAGCGCGTTCGTCATGATGCGTTTAAGGCTGTTTATAAAACATATGGTGATTTTAAAAATACCTTTTCAAGTACG
TTAAGCGGTAATGTTAAAAAGGACAACTTCAATGCAAGAGTAAGAAAATATGATTCGGCAAGACATGCAGCACTCTCAGC
CAACAATATTCCTGAAAGTGTCTATGATAACCTTGTGAATACTGTTACTGATAATCTTCATTTATTGCATCGCTATGTGA
AGCTACGCAAAAAAGTCTTGGGCTTAGAAGAACTTCACATGTATGACCTGTATACACCGTTAGTAAAAGATGTGAAAATG
GAAATAAAGTATGATGAGGCAAAGGATTTAGTGATAAAGGGATTAGCCCCGTTAGGTGAGGAATATTCGAAGATTCTAAA
AGAAGGTTTTGAGAACCGCTGGGTGGATGTCCATGAGAATAAAGGCAAGCGCAGTGGTGCTTACTCCTCCGGAGCCTATG
GTACACATCCATATATTCTGATGAACTGGCAGGATAACGTAAACAATCTATTCACCTTAGCACATGAATTTGGCCATTCC
GTCCATAATTACTACACAAGGAAATCACAGCCGTATCCATACGGAAACTACTCTATCTTCGTTGCTGAGGTAGCTTCTAC
TTGTAATGAAGCACTGTTAAATGATTATTTGTTAAAAACGATTGATGATGAGCAAAAACGAATTTACCTGCTTAATCATT
ATTTAGAGGGTTTTAGGGGCACCGTCTTCCGTCAGACGATGTTTGCAGAATTTGAACATTTGATTCATCAAAAAGCACAA
AATAATGAGGCGCTAACAGCTGATGCTTTAACTGAAGCTTATTATGCGTTGAACAAGAAATATTTTGGTGAAGAGGATAT
TATTATTGATGAGGAAATCGGTTTAGAATGGGCTAGAATTCCGCATTTCTATTACAATTATTATGTGTACCAGTACGCAA
CCGGCTTTAGTGCAGCGACAGCCTTAAGCAAGCAGATCTTGGAAGAAGGCGAACCGGCAGTTAAACGCTATATTGAACAA
TTCCTAAGTGCTGGAAGCTCTGATTACCCGATAGAAGTACTTAAAAAGGCTGGAGTGGACATGACGAGCGCTGATCCAAT
TAAGAATGCATGTAAGGTATTCGAAGAGAAATTGAGTGAATTAGAGCAGTTGCTGTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.161

98.35

0.483