Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RCG19_RS02025 Genome accession   NZ_CP133265
Coordinates   378114..379802 (-) Length   562 a.a.
NCBI ID   WP_308109488.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 373114..384802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG19_RS02000 (RCG19_02000) - 374352..374585 (+) 234 WP_166238253.1 DUF2627 domain-containing protein -
  RCG19_RS02005 (RCG19_02005) - 374643..375371 (-) 729 WP_308109486.1 glycerophosphodiester phosphodiesterase -
  RCG19_RS02010 (RCG19_02010) - 375408..375548 (+) 141 WP_308109487.1 YycC family protein -
  RCG19_RS02015 (RCG19_02015) spo0A 375612..376403 (-) 792 WP_166238259.1 sporulation transcription factor Spo0A -
  RCG19_RS02020 (RCG19_02020) spoIVB 376692..377987 (-) 1296 WP_166238261.1 SpoIVB peptidase -
  RCG19_RS02025 (RCG19_02025) recN 378114..379802 (-) 1689 WP_308109488.1 DNA repair protein RecN Machinery gene
  RCG19_RS02030 (RCG19_02030) ahrC 379818..380267 (-) 450 WP_308109489.1 transcriptional regulator AhrC/ArgR -
  RCG19_RS02035 (RCG19_02035) - 380420..381250 (-) 831 WP_308109490.1 TlyA family RNA methyltransferase -
  RCG19_RS02040 (RCG19_02040) dxs 381254..383149 (-) 1896 WP_308109491.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RCG19_RS02045 (RCG19_02045) - 383280..384173 (-) 894 WP_308109492.1 farnesyl diphosphate synthase -
  RCG19_RS02050 (RCG19_02050) - 384177..384407 (-) 231 WP_166238273.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63426.36 Da        Isoelectric Point: 5.1588

>NTDB_id=872950 RCG19_RS02025 WP_308109488.1 378114..379802(-) (recN) [Neobacillus sp. OS1-2]
MLAELSIKNFAIIQELEISFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEDKAEIEGLFQLDTPNHPILLK
ALEFGIDIEEGMVVLRRDISRTGKSVCRINGKLVTIATLREMGGTLVDIHGQHEHQELMDETRHLTLLDQFGSEEIQASL
GEYTDVFRRYEHTLHKLKTLSENDQQTAHRLDLIQFQLDEIQKAKLKPNEDEELSEEKRKLGNFERVFESIQSGYNGLNG
EQKGLDWVGMTMGYLEDAASLDTAYKEIFESVSNSFYQLEDAARSLRNELDALEYDPGRLNEIEDRLNEINQLKRKYGKT
INEIMEYGAKVEEEIETLMNKETHIEELKKELASIMKDLVLEAKQLSELRQKWANKLTKLIHTELKELYMEKTVFEIRFE
TDLQHFSKNGVDHVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVSSGSQVLCISHLPQVAAMADTHLFIAKMIKGGRTKTSVTPLSIDEKIREIGRMISGAEITDLTKKHAEELLQLAVKTK
VN

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=872950 RCG19_RS02025 WP_308109488.1 378114..379802(-) (recN) [Neobacillus sp. OS1-2]
TTGTTAGCAGAACTATCAATAAAAAATTTCGCCATTATCCAAGAACTGGAGATTAGTTTTGAAAAAGGATTAACCGTTTT
AACCGGCGAAACAGGTGCCGGTAAGTCCATTATTATTGATGCCATTCATTTATTAGTTGGTGGAAGAGGTTCAGCAGAAT
TTGTTCGCCATGGAGAAGACAAAGCTGAAATAGAAGGTTTGTTTCAATTGGATACCCCTAACCATCCTATTCTATTGAAA
GCCTTAGAATTTGGGATAGATATCGAAGAAGGAATGGTGGTTTTACGACGAGATATTTCCCGGACAGGAAAAAGTGTGTG
TCGTATTAACGGAAAATTAGTGACGATAGCAACCCTTCGGGAAATGGGCGGAACTCTTGTAGATATCCATGGTCAGCATG
AACACCAAGAATTGATGGATGAGACAAGACATTTAACATTGCTGGATCAATTTGGTTCTGAGGAAATCCAAGCTTCACTG
GGAGAATACACTGATGTATTTCGCCGATACGAGCATACATTACATAAGCTTAAAACTTTAAGCGAAAATGATCAGCAGAC
AGCCCATCGACTTGATTTAATTCAATTTCAATTAGACGAAATTCAAAAGGCTAAATTAAAGCCAAATGAAGACGAGGAGC
TTTCCGAAGAAAAAAGAAAACTTGGCAATTTCGAACGGGTATTTGAATCCATTCAATCAGGCTATAATGGCCTAAATGGT
GAACAGAAGGGCCTTGATTGGGTTGGAATGACTATGGGGTACTTGGAGGATGCAGCCTCCCTTGACACGGCCTATAAAGA
AATATTTGAATCTGTTTCGAATAGTTTCTATCAATTGGAGGACGCAGCACGATCATTAAGAAATGAATTGGATGCTCTGG
AGTATGATCCAGGAAGGTTAAATGAAATTGAAGACCGCTTAAATGAAATTAACCAGTTAAAACGAAAATATGGGAAAACC
ATCAATGAAATAATGGAATATGGTGCAAAAGTTGAGGAAGAAATAGAAACACTTATGAATAAAGAAACACATATAGAAGA
ACTGAAAAAAGAATTAGCATCCATTATGAAGGACTTAGTTCTAGAGGCAAAACAATTATCCGAACTCCGCCAAAAATGGG
CTAATAAGCTGACAAAATTAATTCATACTGAATTAAAAGAATTATACATGGAAAAAACGGTTTTTGAAATTCGTTTTGAA
ACAGATCTTCAGCATTTTTCTAAAAACGGCGTGGACCATGTTGAATTTTATATTTCGACGAATCCGGGAGAACCATTAAA
GCCATTATCAAAAGTGGCTTCTGGAGGAGAGTTATCACGGATCATGTTGGCGTTGAAAAGTATTTTTTCGAAACATCAAG
GTGTTACTTCGATTATCTTCGATGAAGTGGATACTGGTGTGAGCGGAAGGGTTGCTCAATCCATCGCAGAAAAAATTTAT
AAAGTTTCTTCAGGCTCACAGGTCTTGTGTATTTCCCATTTGCCACAGGTCGCTGCAATGGCAGATACACATCTGTTTAT
TGCTAAGATGATAAAGGGTGGAAGAACAAAAACCTCAGTTACACCACTAAGTATTGATGAAAAGATTAGAGAGATCGGCC
GGATGATATCTGGTGCAGAAATCACCGACTTAACAAAAAAACATGCTGAGGAATTGTTACAATTAGCAGTAAAAACGAAG
GTAAATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.021

100

0.633