Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RCG18_RS15375 Genome accession   NZ_CP133264
Coordinates   3153901..3154848 (+) Length   315 a.a.
NCBI ID   WP_308042041.1    Uniprot ID   -
Organism   Clostridium sp. OS1-26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3148901..3159848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG18_RS15355 (RCG18_15355) - 3149449..3150108 (-) 660 WP_308036920.1 FusB/FusC family EF-G-binding protein -
  RCG18_RS15360 (RCG18_15360) - 3150360..3150665 (-) 306 WP_308036921.1 CD3324 family protein -
  RCG18_RS15365 (RCG18_15365) - 3151075..3152973 (+) 1899 WP_308036922.1 diguanylate cyclase -
  RCG18_RS15370 (RCG18_15370) greA 3153067..3153531 (+) 465 WP_308036923.1 transcription elongation factor GreA -
  RCG18_RS15375 (RCG18_15375) ceuB 3153901..3154848 (+) 948 WP_308042041.1 ABC transporter permease Machinery gene
  RCG18_RS15380 (RCG18_15380) - 3154845..3155795 (+) 951 WP_308036924.1 iron chelate uptake ABC transporter family permease subunit -
  RCG18_RS15385 (RCG18_15385) - 3155792..3156550 (+) 759 WP_308036925.1 ATP-binding cassette domain-containing protein -
  RCG18_RS15390 (RCG18_15390) - 3156572..3157528 (+) 957 WP_308036926.1 siderophore ABC transporter substrate-binding protein -
  RCG18_RS15395 (RCG18_15395) - 3157653..3157844 (-) 192 WP_308036927.1 hypothetical protein -
  RCG18_RS15400 (RCG18_15400) - 3157889..3158782 (-) 894 WP_308036928.1 glycosyltransferase -
  RCG18_RS15405 (RCG18_15405) - 3158789..3159181 (-) 393 WP_308036929.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 35381.87 Da        Isoelectric Point: 10.0096

>NTDB_id=872937 RCG18_RS15375 WP_308042041.1 3153901..3154848(+) (ceuB) [Clostridium sp. OS1-26]
MKIRYLLISLLILSFISIFIGTKDIKFIDILNFEKDKLEILILSRIPRLISILAAGTSIAVSGLIMQQISRNSFVSPTTG
ATEDSAKLGILVSILLFPSASYLNKMIICFIFSLAGTFLFMHILRRIKFKNNIFVPLVGMMLGAIIESVTTFFAYKYDVI
QNIESWTQGNFSMIIKDRYELVYLSIPLMIIAYLFANKFTISGLGKEFSKNLGLDYEKVVNIGVIIVALMSSIMIIIVGK
IPFLGLIIPNIIRIYKGDNLKENFVATALFGAVFLLFCDIFGRLIIYPYEIPIGLMVGVIGSGIFLYLLFRRKLA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=872937 RCG18_RS15375 WP_308042041.1 3153901..3154848(+) (ceuB) [Clostridium sp. OS1-26]
ATAAAGATAAGATATTTATTAATAAGTTTGCTTATTTTGTCGTTTATATCGATATTTATTGGAACTAAAGATATAAAATT
TATTGACATATTAAATTTTGAAAAAGATAAATTAGAAATACTCATTCTAAGTAGAATACCAAGATTGATAAGTATTTTAG
CGGCTGGGACAAGTATTGCTGTAAGCGGTCTTATAATGCAGCAAATAAGTCGTAATAGTTTTGTGTCGCCAACTACAGGT
GCCACTGAAGATAGTGCAAAACTTGGAATATTAGTATCAATTTTATTATTTCCTTCAGCTAGCTATCTTAACAAAATGAT
AATATGTTTTATATTTTCACTAGCTGGTACTTTTCTATTTATGCACATTTTAAGGAGAATTAAATTTAAGAATAACATAT
TTGTTCCTCTTGTTGGAATGATGCTGGGAGCAATAATAGAATCTGTAACAACTTTCTTTGCGTATAAATATGATGTAATT
CAAAATATAGAATCTTGGACACAAGGAAATTTTTCAATGATTATAAAAGATCGATATGAACTAGTTTACTTAAGCATTCC
ACTTATGATAATAGCTTATTTATTTGCAAATAAGTTTACTATTTCAGGGCTTGGCAAAGAGTTTTCTAAAAATCTAGGAT
TAGATTATGAAAAGGTAGTGAATATCGGAGTTATAATAGTTGCGCTTATGTCTTCAATAATGATTATTATTGTTGGTAAA
ATACCCTTTTTAGGGCTTATAATTCCTAATATTATTAGAATATATAAAGGAGATAATTTGAAAGAAAATTTTGTTGCTAC
AGCTTTATTTGGTGCAGTGTTCCTTCTTTTCTGTGACATTTTTGGAAGACTTATAATCTATCCATATGAAATTCCAATAG
GACTTATGGTTGGAGTTATAGGAAGTGGAATATTCTTATATCTACTTTTCAGGAGGAAGTTGGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.84

99.365

0.495