NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	RCG18_RS06215	Genome accession	NZ_CP133264
Coordinates	1249317..1250672 (-)	Length	451 a.a.
NCBI ID	WP_308040504.1	Uniprot ID	-
Organism	Clostridium sp. OS1-26
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1244317..1255672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCG18_RS06190 (RCG18_06190)	ispD	1245256..1245954 (-)	699	WP_308040500.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RCG18_RS06195 (RCG18_06195)	-	1245956..1247059 (-)	1104	WP_308040501.1	PIN/TRAM domain-containing protein	-
RCG18_RS06200 (RCG18_06200)	-	1247171..1247647 (-)	477	WP_308040502.1	CarD family transcriptional regulator	-
RCG18_RS06205 (RCG18_06205)	-	1247796..1248200 (+)	405	WP_308040503.1	DUF1573 domain-containing protein	-
RCG18_RS06210 (RCG18_06210)	disA	1248228..1249301 (-)	1074	WP_308041970.1	DNA integrity scanning diadenylate cyclase DisA	-
RCG18_RS06215 (RCG18_06215)	radA	1249317..1250672 (-)	1356	WP_308040504.1	DNA repair protein RadA	Machinery gene
RCG18_RS06220 (RCG18_06220)	-	1250812..1253247 (-)	2436	WP_308040505.1	ATP-dependent Clp protease ATP-binding subunit	-
RCG18_RS06225 (RCG18_06225)	-	1253270..1254304 (-)	1035	WP_308040506.1	protein arginine kinase	-
RCG18_RS06230 (RCG18_06230)	-	1254320..1254838 (-)	519	WP_308040507.1	UvrB/UvrC motif-containing protein	-
RCG18_RS06235 (RCG18_06235)	-	1254919..1255377 (-)	459	WP_308040508.1	CtsR family transcriptional regulator	-

Sequence

Protein

Download Length: 451 a.a. Molecular weight: 49716.15 Da Isoelectric Point: 6.6544

                                >NTDB_id=872929 RCG18_RS06215 WP_308040504.1 1249317..1250672(-) (radA) [Clostridium sp. OS1-26]

MAKNKTTFVCQECGYESPKWLGKCPNCSTWNSLVEEIKSVNNFAFNPLKSGSVPKNITSIKSSEYERFDTGITELNRVLG

GGLVKGSLTLISGAPGIGKSTLLLQTANNISQKYGKVLYVSGEESEEQIKMRGDRLDTISENLYVVSETNLDQIQEHIEN

TKPVFVIIDSIQTLFKQSVSSAPGSVSQVRESANDIMHMGKSKGISFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGQRT

EEFRILRTLKNRFGTTSEIGVFEMRESGLEEISNPSEVFLEETEFQKEGSVVIGVMEGTRPILVEIQALVSETKAVMPRR

TAVGVDASRLNLILAVLEKKLKIPFYNSDVYINVVGGLNIEGTFGDLGLALALISSVKSKEISLEKLLVVGEIGLTGEVR

PVSFCDRLVNEAHKMGFKNVIIPMRNLEKIRNRNINSISVSSLREAVNKVF

Nucleotide

Download Length: 1356 bp

                                >NTDB_id=872929 RCG18_RS06215 WP_308040504.1 1249317..1250672(-) (radA) [Clostridium sp. OS1-26]

GTGGCGAAAAATAAGACCACGTTTGTTTGCCAAGAATGTGGGTATGAATCCCCTAAGTGGTTAGGGAAATGTCCAAATTG

TAGCACATGGAATAGTTTAGTTGAAGAAATTAAATCAGTAAATAATTTTGCATTTAATCCATTAAAGTCTGGAAGTGTTC

CTAAAAATATAACTAGTATAAAGTCTAGTGAATATGAAAGATTTGATACGGGAATAACAGAACTAAACAGGGTTTTAGGA

GGAGGACTAGTTAAGGGTTCTCTTACATTGATATCTGGAGCACCAGGAATAGGAAAATCAACGTTGCTTTTACAGACAGC

TAATAATATATCACAAAAGTATGGAAAAGTTTTATATGTGTCAGGTGAGGAGTCCGAGGAACAAATAAAAATGAGAGGAG

ATAGACTCGATACAATATCGGAAAATCTTTATGTGGTTTCAGAAACAAATCTAGATCAAATACAGGAACATATAGAAAAC

ACAAAGCCTGTATTCGTAATCATAGACTCTATACAAACTCTTTTTAAGCAATCAGTTAGTTCTGCTCCAGGAAGTGTGTC

TCAAGTTCGAGAAAGTGCTAACGATATTATGCATATGGGGAAGAGCAAAGGCATATCATTTTTTATTGTGGCGCATGTTA

CTAAGCAAGGTGAATTAGCTGGGCCTAGAGTACTTGAACATATGGTGGATACAGTTTTGTCTTTTGAAGGGCAAAGAACA

GAGGAGTTTAGAATATTAAGAACCTTGAAGAATCGTTTTGGAACTACTAGTGAAATTGGAGTTTTCGAGATGAGGGAAAG

TGGGCTTGAAGAAATATCTAATCCATCAGAAGTATTTCTTGAAGAAACTGAGTTTCAAAAAGAAGGTTCAGTAGTTATAG

GTGTTATGGAGGGAACGAGACCAATTTTAGTTGAAATACAAGCCTTGGTCAGTGAAACAAAGGCAGTTATGCCTAGAAGA

ACTGCAGTAGGGGTAGATGCTTCTAGGCTAAATCTTATACTAGCAGTTTTGGAGAAAAAACTTAAAATACCATTTTATAA

TTCAGATGTTTATATAAATGTTGTTGGTGGACTTAATATTGAAGGAACATTTGGAGATTTAGGGCTTGCATTGGCGCTTA

TATCAAGTGTAAAATCTAAAGAAATAAGTCTAGAAAAACTATTAGTGGTTGGAGAAATTGGGTTAACAGGCGAAGTAAGA

CCAGTATCCTTTTGTGATAGACTTGTAAATGAAGCACATAAAATGGGATTTAAGAATGTAATAATACCGATGAGAAACTT

GGAGAAGATAAGAAATAGGAATATTAATAGTATTTCTGTATCATCTCTTAGAGAAGCGGTAAATAAAGTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.656	100	0.519
radA	Streptococcus pneumoniae Rx1	49.119	100	0.494
radA	Streptococcus pneumoniae D39	49.119	100	0.494
radA	Streptococcus pneumoniae R6	49.119	100	0.494
radA	Streptococcus pneumoniae TIGR4	49.119	100	0.494
radA	Streptococcus mitis NCTC 12261	49.119	100	0.494
radA	Streptococcus mitis SK321	49.119	100	0.494

Detailed information NTG0872929