Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHT89_RS05710 Genome accession   NZ_CP148570
Coordinates   1106742..1107371 (-) Length   209 a.a.
NCBI ID   WP_021535003.1    Uniprot ID   -
Organism   Escherichia coli strain Z1322HEC0009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101742..1112371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHT89_RS05695 (WHT89_05695) helD 1101984..1104038 (-) 2055 WP_001297106.1 DNA helicase IV -
  WHT89_RS05700 (WHT89_05700) yccF 1104161..1104607 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHT89_RS05705 (WHT89_05705) yccS 1104617..1106779 (+) 2163 WP_000875015.1 YccS family putative transporter -
  WHT89_RS05710 (WHT89_05710) sxy/tfoX 1106742..1107371 (-) 630 WP_021535003.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHT89_RS05715 (WHT89_05715) sulA 1107590..1108099 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHT89_RS05720 (WHT89_05720) ompA 1108456..1109496 (+) 1041 WP_000750416.1 porin OmpA -
  WHT89_RS05725 (WHT89_05725) matP 1109572..1110024 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHT89_RS05730 (WHT89_05730) ycbZ 1110210..1111970 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.06 Da        Isoelectric Point: 9.2180

>NTDB_id=872922 WHT89_RS05710 WP_021535003.1 1106742..1107371(-) (sxy/tfoX) [Escherichia coli strain Z1322HEC0009]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLLNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872922 WHT89_RS05710 WP_021535003.1 1106742..1107371(-) (sxy/tfoX) [Escherichia coli strain Z1322HEC0009]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCTCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995