Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCG24_RS16055 Genome accession   NZ_CP133263
Coordinates   3217287..3218663 (-) Length   458 a.a.
NCBI ID   WP_202651844.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3212287..3223663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG24_RS16035 (RCG24_16035) gltX 3213161..3214618 (-) 1458 WP_202651836.1 glutamate--tRNA ligase -
  RCG24_RS16040 (RCG24_16040) ispF 3214687..3215169 (-) 483 WP_202651838.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RCG24_RS16045 (RCG24_16045) ispD 3215169..3215861 (-) 693 WP_202651840.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCG24_RS16050 (RCG24_16050) - 3215945..3217033 (-) 1089 WP_308077481.1 PIN/TRAM domain-containing protein -
  RCG24_RS16055 (RCG24_16055) radA 3217287..3218663 (-) 1377 WP_202651844.1 DNA repair protein RadA Machinery gene
  RCG24_RS16060 (RCG24_16060) clpC 3218794..3221238 (-) 2445 WP_202651846.1 ATP-dependent protease ATP-binding subunit ClpC -
  RCG24_RS16065 (RCG24_16065) - 3221255..3222328 (-) 1074 WP_202651848.1 protein arginine kinase -
  RCG24_RS16070 (RCG24_16070) - 3222330..3222878 (-) 549 WP_308077482.1 UvrB/UvrC motif-containing protein -
  RCG24_RS16075 (RCG24_16075) - 3222963..3223424 (-) 462 WP_202651851.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49597.07 Da        Isoelectric Point: 6.9571

>NTDB_id=872910 RCG24_RS16055 WP_202651844.1 3217287..3218663(-) (radA) [Neobacillus sp. OS1-32]
MVKRKTKFICQECGYESPKWMGKCPGCGTWNKMVEEIEVTGAARRGAFAHSQGGTIVTKPTPITSIETVSEPRIYTDLAE
LNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLAEKGHQVLYISGEESLRQTKLRAERLGISSEHLLVYAETNLEEM
NRTIEQTNPSFVIVDSIQTIFHPDVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVENPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLANQDAYVKVAGGVKLDEPAIDLAVAVSIASSFRDQPTRPADCIIGEVGL
TGEIRRVSRIEQRVQEAAKLGFERVILPANNLGGWTGPKGIELIGVSSVAEALKAALG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=872910 RCG24_RS16055 WP_202651844.1 3217287..3218663(-) (radA) [Neobacillus sp. OS1-32]
ATGGTAAAGCGAAAAACGAAGTTTATTTGTCAAGAGTGCGGGTATGAATCGCCAAAATGGATGGGAAAATGTCCGGGGTG
CGGGACTTGGAACAAAATGGTGGAGGAAATAGAGGTTACGGGAGCGGCGAGAAGAGGGGCATTTGCTCATTCACAAGGAG
GAACGATTGTAACCAAACCGACTCCAATTACGTCTATTGAAACGGTAAGTGAACCGCGCATTTATACAGATTTAGCAGAG
CTCAATCGTGTCCTGGGCGGCGGTGTGGTTAAAGGCTCGCTGGTGTTAATTGGCGGTGACCCGGGAATTGGTAAGTCCAC
CCTTCTGTTGCAAGTCTCATCACAGCTTGCAGAGAAAGGTCATCAGGTTTTATATATATCAGGTGAGGAATCGCTGCGCC
AGACGAAACTAAGAGCCGAGCGATTAGGGATCTCTTCTGAACATTTGCTTGTTTATGCGGAAACCAACCTTGAGGAAATG
AATCGGACAATCGAGCAGACAAACCCCAGCTTTGTCATCGTTGACTCGATTCAAACCATATTTCATCCGGATGTGACGTC
GGCTCCTGGGAGTGTCTCGCAAGTTCGGGAGTGCACCGCAGAATTGATGCGAATTGGAAAAACAAAAGGAATTGCCATTT
TTATTGTCGGGCATGTGACAAAGGAAGGGTCGATTGCCGGGCCGCGCCTGCTTGAGCATATGGTTGATACAGTGCTTTAT
TTTGAGGGGGAAAGACACCACACGTATCGGATCCTCAGAGCGGTGAAAAACCGCTTTGGTTCGACAAATGAAATGGGGAT
TTTTGAAATGAAGGAATCTGGCTTGGAAGAGGTGGAAAATCCATCTGAAATCTTCCTTGAAGAGCGGTCGCGCGGGGCTG
CTGGTTCCACTGTTGTTGCTTCTATGGAAGGGACACGGCCGGTTCTGGTAGAAATTCAGGCATTGATTTCCCCAACAAGC
TTTGGTAACCCCAGAAGAATGGCAACAGGCATTGACCATAACCGTGTGCCGTTATTAATGGCTGTGCTGGAAAAACGGGT
TGGGATGCTGCTGGCAAACCAGGATGCTTACGTTAAAGTAGCCGGCGGTGTTAAACTGGATGAACCGGCGATTGACCTGG
CTGTTGCTGTCAGTATTGCCTCAAGCTTCCGTGATCAGCCGACAAGACCGGCGGATTGTATTATAGGCGAGGTGGGTTTA
ACAGGAGAAATCCGACGGGTTTCAAGGATTGAACAACGTGTTCAGGAAGCTGCGAAATTGGGTTTTGAGCGGGTCATTTT
GCCGGCAAACAATTTGGGCGGCTGGACAGGTCCAAAAGGAATCGAATTGATTGGTGTTTCTTCCGTCGCTGAAGCATTAA
AGGCTGCACTAGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

78.214

100

0.784
  radA Streptococcus mitis NCTC 12261

62.664

100

0.627
  radA Streptococcus pneumoniae Rx1

62.664

100

0.627
  radA Streptococcus pneumoniae D39

62.664

100

0.627
  radA Streptococcus pneumoniae R6

62.664

100

0.627
  radA Streptococcus pneumoniae TIGR4

62.664

100

0.627
  radA Streptococcus mitis SK321

62.445

100

0.624