Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RCG24_RS12930 Genome accession   NZ_CP133263
Coordinates   2583202..2584152 (-) Length   316 a.a.
NCBI ID   WP_308077192.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2578202..2589152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG24_RS12905 (RCG24_12905) - 2578416..2579510 (-) 1095 WP_308079176.1 carbohydrate kinase -
  RCG24_RS12910 (RCG24_12910) - 2579876..2580412 (+) 537 WP_202652978.1 ribonuclease H-like YkuK family protein -
  RCG24_RS12915 (RCG24_12915) - 2580528..2581481 (-) 954 WP_202652921.1 siderophore ABC transporter substrate-binding protein -
  RCG24_RS12920 (RCG24_12920) - 2581501..2582262 (-) 762 WP_308077190.1 ABC transporter ATP-binding protein -
  RCG24_RS12925 (RCG24_12925) - 2582262..2583209 (-) 948 WP_308077191.1 iron chelate uptake ABC transporter family permease subunit -
  RCG24_RS12930 (RCG24_12930) ceuB 2583202..2584152 (-) 951 WP_308077192.1 ABC transporter permease Machinery gene
  RCG24_RS12935 (RCG24_12935) - 2584459..2585451 (-) 993 WP_308077193.1 DUF418 domain-containing protein -
  RCG24_RS12940 (RCG24_12940) - 2585717..2587231 (-) 1515 WP_308077194.1 acetyl-CoA hydrolase/transferase family protein -
  RCG24_RS12945 (RCG24_12945) - 2587444..2588088 (-) 645 WP_308079177.1 LytTR family DNA-binding domain-containing protein -
  RCG24_RS12950 (RCG24_12950) - 2588247..2588858 (-) 612 WP_202652927.1 methyltransferase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34712.05 Da        Isoelectric Point: 10.3058

>NTDB_id=872908 RCG24_RS12930 WP_308077192.1 2583202..2584152(-) (ceuB) [Neobacillus sp. OS1-32]
MKMKYLLLGLLVLSAASLFVGVSTVSPLDLLNLQSEDTQIFLISRLPRLIAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLVFANASMLQKMAVAFAFALAGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYKADVI
QNMSAWLQGDFSMIMKGRYELLYISVPIIIIAYFYANRFTVAGMGEDFSKNLGLAYRRIVNIGLILVALITATVVLTVGI
IPFLGLIIPNIISIFKGDHLKKTLPHTALLGAIFLLICDILGRVIIYPYEISISLMVGVIGSGIFLYLLFRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=872908 RCG24_RS12930 WP_308077192.1 2583202..2584152(-) (ceuB) [Neobacillus sp. OS1-32]
ATGAAGATGAAATATTTACTGCTGGGATTATTGGTATTATCGGCTGCCTCTTTGTTCGTAGGAGTAAGCACTGTATCACC
ATTGGATTTGTTGAACCTCCAGTCAGAGGACACCCAAATATTCCTAATTAGCCGGCTGCCAAGGCTTATCGCGATTTTGC
TTGCTGGAGCTGGAATGAGCATTGCAGGACTAATTATGCAGCAGCTAAGCCGAAACAAGTTTGTTTCGCCGACTACAGCT
GGGACATTAGATGCTACGAGGCTGGGAATACTCGTCTCGATGCTGGTATTTGCGAACGCATCAATGCTCCAAAAAATGGC
GGTTGCTTTTGCCTTTGCCCTTGCCGGGACCTTTCTATTCATGCAGATCCTTGACCGCATCAAGTTTAAAGATGCAATAT
TCATTCCGCTTGTAGGGTTGATGTTTGGCAATATTTTGTCTTCGGTAACAACCTTCTTTGCCTACAAAGCAGATGTAATT
CAAAATATGTCGGCATGGCTCCAGGGTGATTTTTCGATGATCATGAAAGGCCGCTATGAATTACTCTACATAAGTGTTCC
GATTATTATCATTGCCTATTTCTATGCCAACCGCTTTACCGTAGCGGGAATGGGGGAGGATTTCTCGAAAAATCTCGGGC
TTGCTTACCGGCGAATTGTGAATATTGGCTTGATTCTTGTGGCACTGATCACAGCAACTGTTGTTTTAACTGTTGGGATT
ATCCCATTTCTTGGTTTAATCATTCCTAACATTATCTCGATTTTTAAAGGAGATCATTTGAAAAAAACCTTACCGCATAC
GGCACTGCTTGGTGCTATTTTCCTTCTCATTTGTGACATTCTTGGCAGGGTAATCATTTACCCCTATGAGATTTCGATCA
GTCTCATGGTCGGTGTCATCGGAAGCGGCATTTTTTTATATTTGTTGTTCCGGAGGAAAAGATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

100

0.535