Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RCG24_RS09615 Genome accession   NZ_CP133263
Coordinates   1893771..1895591 (-) Length   606 a.a.
NCBI ID   WP_202653680.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-32     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888771..1900591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG24_RS09590 (RCG24_09590) - 1889525..1890319 (-) 795 WP_308078945.1 NAD kinase -
  RCG24_RS09595 (RCG24_09595) - 1890353..1890991 (-) 639 WP_235888046.1 GTP pyrophosphokinase family protein -
  RCG24_RS09600 (RCG24_09600) - 1891251..1891835 (+) 585 WP_202653682.1 CYTH domain-containing protein -
  RCG24_RS09605 (RCG24_09605) - 1891976..1892389 (+) 414 WP_202653681.1 globin -
  RCG24_RS09610 (RCG24_09610) - 1892382..1893251 (+) 870 WP_308078946.1 ClpXP adapter SpxH family protein -
  RCG24_RS09615 (RCG24_09615) pepF 1893771..1895591 (-) 1821 WP_202653680.1 oligoendopeptidase F Regulator
  RCG24_RS09620 (RCG24_09620) - 1895731..1896933 (-) 1203 WP_202653679.1 competence protein CoiA -
  RCG24_RS09625 (RCG24_09625) cls 1897026..1898537 (-) 1512 WP_308078947.1 cardiolipin synthase -
  RCG24_RS09630 (RCG24_09630) mecA 1898615..1899280 (-) 666 WP_202653677.1 adaptor protein MecA -
  RCG24_RS09635 (RCG24_09635) spxA 1899601..1899996 (-) 396 WP_202653676.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69503.99 Da        Isoelectric Point: 4.8960

>NTDB_id=872896 RCG24_RS09615 WP_202653680.1 1893771..1895591(-) (pepF) [Neobacillus sp. OS1-32]
MANESNVKSLPSRNELPVEETWRLEDIFASDEEWEKEYQAVKGLIPSIKDFEGKLAESADTLYKALQVEDQLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQVGSALAFIVPEILSIDEDKLKGFLNEKQELKLYEHAIEEINLQRPHVLSAE
QEALLAEAGEVMDASSNTFGTLNNADLQFPSIKDENGEEVEVTHGRYIRFLESSDRRVRHDAFKAVYKTYGDFKNTFAST
LSGNVKKNNFNARVRKYQSARHAALSANNIPESVYDNLVNTVNKNLSLLHRYVKLRKKVLGINELHMYDLYTPLVKDVKM
EITYDEAKDIVLKGLAPLGEDYAKVLKEGFENRWVDVHENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDFLLKTMEDDGKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADALTEIYYDLNKKYFGDEIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGESAVKRYINFL
SAGSSDYPIEVLKKAGVDMTSAAPIQDALQVFEEKLAELEQLLTEK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=872896 RCG24_RS09615 WP_202653680.1 1893771..1895591(-) (pepF) [Neobacillus sp. OS1-32]
ATGGCCAATGAATCTAATGTAAAATCACTGCCGTCAAGAAATGAACTTCCTGTTGAAGAGACATGGAGATTGGAGGACAT
TTTTGCAAGCGACGAGGAATGGGAGAAAGAATACCAAGCAGTAAAGGGTCTCATTCCGTCAATTAAAGACTTTGAGGGCA
AATTAGCTGAAAGTGCCGATACACTTTACAAAGCCCTTCAGGTTGAGGATCAATTGCTTGAAAGAATCGGCAAGCTATAT
ACATATTCACATATGCGATATGATCAGGATACGACTAACTCCTTTTATCAAGGATTGGATGATCGGATGAAAAATCTCTA
TTCCCAGGTTGGCAGTGCGCTGGCCTTTATTGTTCCGGAGATTCTTTCGATTGACGAGGACAAATTAAAAGGCTTTTTGA
ATGAAAAACAGGAGTTAAAACTATATGAGCATGCCATTGAGGAAATTAATCTGCAGCGGCCTCATGTGCTAAGTGCCGAG
CAGGAAGCGCTATTAGCTGAAGCAGGAGAAGTGATGGATGCCTCAAGCAATACATTTGGGACATTGAATAATGCCGATCT
ACAATTCCCTTCCATTAAAGATGAGAACGGTGAAGAAGTAGAAGTCACCCACGGCCGCTATATACGCTTTCTGGAAAGCA
GCGACCGCCGGGTAAGGCATGATGCGTTTAAAGCGGTTTACAAGACGTATGGTGATTTCAAAAACACATTTGCCAGTACA
TTAAGCGGCAATGTGAAAAAGAATAATTTCAATGCCCGCGTAAGAAAATATCAGTCAGCAAGACATGCAGCGCTTTCGGC
CAATAATATTCCCGAAAGTGTCTATGATAACCTAGTCAATACGGTGAATAAAAATCTCTCTTTATTGCATCGCTATGTAA
AGCTGCGTAAAAAAGTATTAGGAATAAACGAGCTTCATATGTACGATTTATATACACCGTTAGTAAAAGATGTAAAAATG
GAGATTACGTATGACGAGGCAAAGGATATTGTTCTTAAAGGTTTGGCGCCGTTAGGCGAGGATTATGCCAAGGTGCTGAA
AGAGGGGTTTGAAAACCGCTGGGTCGATGTCCATGAAAATAAAGGGAAGCGAAGCGGTGCCTATTCTTCAGGTGCATATG
GAACCAATCCATATATTTTGTTGAACTGGCAGGATAACGTCAATAATTTGTTCACCTTAGCTCATGAATTCGGCCACTCA
GTTCATAGCTACTATACAAGGAAATCGCAGCCATATCCGTATGGAAATTATTCGATCTTCGTTGCTGAAGTCGCTTCTAC
ATGTAACGAGGCATTGCTTAATGATTTTTTATTAAAAACGATGGAGGATGACGGAAAGCGGATTTATCTGTTAAACCATT
ATTTAGAAGGTTTCCGTGGCACTGTCTTCCGCCAAACAATGTTTGCTGAATTTGAGCATTTAATTCATCAAAAAGCACAG
AATAACGAAGCGTTAACAGCCGATGCTTTAACAGAAATCTACTATGATTTAAATAAAAAGTATTTTGGGGACGAGATTGT
GATTGATGAGGAAATCGGACTTGAATGGGCGAGAATTCCGCATTTTTATTACAATTATTATGTCTACCAATATGCTACTG
GATTTAGCGCGGCGACAGCCTTAAGCAAGCAAATTTTAGAAGAAGGCGAATCGGCGGTGAAACGGTATATCAATTTCTTA
AGTGCCGGAAGCTCCGATTATCCGATTGAAGTCTTGAAGAAAGCCGGAGTCGATATGACCAGTGCAGCTCCAATCCAAGA
TGCCCTTCAGGTGTTTGAAGAAAAACTTGCTGAGCTGGAACAGTTATTAACAGAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.676

97.69

0.495