Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU28_RS18040 Genome accession   NZ_CP148507
Coordinates   3466196..3466825 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323CEC0001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3461196..3471825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU28_RS18025 (WHU28_18015) helD 3461438..3463492 (-) 2055 WP_000420536.1 DNA helicase IV -
  WHU28_RS18030 (WHU28_18020) yccF 3463615..3464061 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHU28_RS18035 (WHU28_18025) yccS 3464071..3466233 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WHU28_RS18040 (WHU28_18030) sxy/tfoX 3466196..3466825 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU28_RS18045 (WHU28_18035) sulA 3467044..3467553 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  WHU28_RS18050 (WHU28_18040) ompA 3467910..3468962 (+) 1053 WP_032202393.1 porin OmpA -
  WHU28_RS18055 (WHU28_18045) matP 3469038..3469490 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU28_RS18060 (WHU28_18050) ycbZ 3469676..3471436 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=872874 WHU28_RS18040 WP_000839153.1 3466196..3466825(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872874 WHU28_RS18040 WP_000839153.1 3466196..3466825(-) (sxy/tfoX) [Escherichia coli strain Z1323CEC0001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1