Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RCG22_RS22970 Genome accession   NZ_CP133262
Coordinates   4705381..4707090 (+) Length   569 a.a.
NCBI ID   WP_308104847.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4700381..4712090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS22945 (RCG22_22945) - 4700727..4700960 (+) 234 WP_066257472.1 exodeoxyribonuclease VII small subunit -
  RCG22_RS22950 (RCG22_22950) - 4700964..4701857 (+) 894 WP_308104845.1 farnesyl diphosphate synthase -
  RCG22_RS22955 (RCG22_22955) dxs 4702044..4703939 (+) 1896 WP_308107227.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RCG22_RS22960 (RCG22_22960) - 4703943..4704782 (+) 840 WP_308104846.1 TlyA family RNA methyltransferase -
  RCG22_RS22965 (RCG22_22965) ahrC 4704916..4705365 (+) 450 WP_098261746.1 transcriptional regulator AhrC/ArgR -
  RCG22_RS22970 (RCG22_22970) recN 4705381..4707090 (+) 1710 WP_308104847.1 DNA repair protein RecN Machinery gene
  RCG22_RS22975 (RCG22_22975) spoIVB 4707271..4708560 (+) 1290 WP_308104848.1 SpoIVB peptidase -
  RCG22_RS22980 (RCG22_22980) spo0A 4708848..4709639 (+) 792 WP_098261743.1 sporulation transcription factor Spo0A -
  RCG22_RS22985 (RCG22_22985) - 4709797..4710777 (+) 981 WP_308104849.1 tyrosine-type recombinase/integrase -
  RCG22_RS22990 (RCG22_22990) - 4710842..4711228 (-) 387 WP_308104851.1 toll/interleukin-1 receptor domain-containing protein -
  RCG22_RS22995 (RCG22_22995) - 4711236..4711862 (-) 627 WP_308104853.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63936.94 Da        Isoelectric Point: 5.3550

>NTDB_id=872874 RCG22_RS22970 WP_308104847.1 4705381..4707090(+) (recN) [Neobacillus sp. OS1-33]
MLAELSIKNFAIIEALSVTFSKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQVDDNKHPVITK
ALEFGIDVEEGMVILRRDISQTGKSVCRINGKLVTISTLREIGATLVDIHGQHEHQELMDDSRHLSLLDQFGADNILPSL
SEYQQVFRRYEQTLQKLKALSENDQQTAHRLDLIQFQLDEIQKANLKLNEDEELFEEKRKLSNFERVFESLQSGHSALQG
EQKGLDWISMVMGHLEDAAALDTAYRGIYEAVSNSFYQLEDAASVLRNDLDELEFDPQRLHEIEDRLTEINQLKRKYGKT
INEIVEYAVKIEEEIETLQNKETHIGELEKELTSIKKDLVLEAKQLTEIRLKWAEKLTKLIHKELKELYMAKTVFEIRFE
SNSQQFAKNGVDHVAFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVAAGSQVLCISHLPQVAAMADTHLFISKIIKGGRTKTSVTPLQMDEKINEIGRMISGTEITDLTKKHAEELLYLAVENK
KSASALTRQ

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=872874 RCG22_RS22970 WP_308104847.1 4705381..4707090(+) (recN) [Neobacillus sp. OS1-33]
TTGTTAGCTGAATTATCAATTAAAAATTTCGCTATTATCGAAGCTTTGTCAGTAACGTTTTCAAAAGGATTAACTGTATT
AACCGGGGAAACCGGTGCGGGAAAATCAATCATCATTGATGCGATTCACTTATTAGTTGGCGGCAGAGGGTCCGCAGAAT
TTGTTCGTCATGGCGAGGAAAAGGCGGAAATTGAAGGACTGTTTCAGGTTGATGATAATAAGCATCCAGTAATTACGAAA
GCTTTAGAATTTGGGATCGATGTGGAAGAAGGAATGGTTATATTAAGAAGGGATATTTCCCAAACAGGAAAAAGTGTGTG
CCGTATCAATGGAAAGCTTGTGACAATCTCGACGCTTAGGGAAATCGGGGCAACCCTCGTTGATATTCATGGCCAGCATG
AGCATCAGGAATTAATGGATGACTCAAGGCACCTTTCCCTGCTAGATCAATTTGGGGCCGATAATATATTGCCTTCACTA
AGTGAATACCAGCAAGTATTTCGACGTTATGAGCAAACCTTACAAAAGTTAAAAGCATTAAGTGAAAATGATCAGCAAAC
TGCCCATCGCCTAGATTTAATTCAATTTCAATTGGATGAAATTCAAAAGGCAAATTTAAAACTTAATGAAGATGAAGAAC
TTTTTGAGGAAAAAAGAAAACTAAGTAATTTCGAAAGAGTATTTGAATCTTTGCAATCCGGCCATTCAGCACTCCAAGGT
GAACAAAAAGGGCTTGATTGGATTAGTATGGTTATGGGGCATCTTGAAGATGCCGCTGCCCTTGATACGGCTTACAGGGG
CATCTACGAAGCTGTGTCGAATAGCTTCTACCAATTGGAAGATGCAGCAAGTGTTTTAAGAAATGACTTAGATGAATTAG
AATTTGATCCACAGCGGTTACATGAAATCGAAGATCGCTTGACTGAAATTAACCAATTAAAGCGGAAATACGGAAAAACA
ATCAATGAGATCGTAGAGTATGCTGTGAAAATCGAAGAAGAAATTGAAACATTACAAAATAAAGAAACTCATATAGGGGA
ATTAGAAAAAGAATTAACTTCTATAAAAAAGGACTTAGTTCTCGAAGCGAAGCAGTTAACTGAAATTCGTCTGAAATGGG
CTGAAAAACTTACAAAGTTAATACATAAAGAACTTAAAGAATTGTATATGGCGAAAACTGTTTTTGAAATAAGATTTGAA
TCAAATTCACAGCAATTTGCAAAAAACGGTGTCGACCATGTTGCTTTCTATATTTCAACAAACCCCGGTGAACCATTGAA
ACCCTTATCAAAGGTTGCATCTGGAGGGGAATTATCAAGAATTATGCTGGCATTAAAAAGTATTTTTTCTAAACATCAGG
GAGTTACATCCATTATTTTTGATGAGGTCGATACTGGTGTTAGCGGCAGGGTTGCTCAGTCCATTGCGGAAAAAATATAT
AAAGTGGCTGCCGGATCACAGGTCTTGTGTATTTCACATTTACCTCAGGTAGCAGCAATGGCTGATACGCACTTATTCAT
TTCAAAGATTATAAAAGGGGGAAGAACGAAAACTTCTGTTACTCCCTTACAGATGGATGAAAAGATTAACGAAATAGGCC
GGATGATATCTGGGACAGAAATAACTGACCTAACTAAAAAACATGCGGAAGAATTATTATATTTAGCTGTAGAAAACAAA
AAAAGTGCAAGTGCCTTGACAAGGCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.728

99.649

0.615