Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCG22_RS15095 Genome accession   NZ_CP133262
Coordinates   3122299..3123681 (-) Length   460 a.a.
NCBI ID   WP_308103625.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3117299..3128681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS15075 (RCG22_15075) ispF 3118678..3119160 (-) 483 WP_308107170.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RCG22_RS15080 (RCG22_15080) ispD 3119188..3119892 (-) 705 WP_308103623.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCG22_RS15085 (RCG22_15085) - 3119919..3121007 (-) 1089 WP_098262349.1 PIN/TRAM domain-containing protein -
  RCG22_RS15090 (RCG22_15090) disA 3121216..3122295 (-) 1080 WP_308103624.1 DNA integrity scanning diadenylate cyclase DisA -
  RCG22_RS15095 (RCG22_15095) radA 3122299..3123681 (-) 1383 WP_308103625.1 DNA repair protein RadA Machinery gene
  RCG22_RS15100 (RCG22_15100) clpC 3124025..3126466 (-) 2442 WP_098262352.1 ATP-dependent protease ATP-binding subunit ClpC -
  RCG22_RS15105 (RCG22_15105) - 3126484..3127554 (-) 1071 WP_308103626.1 protein arginine kinase -
  RCG22_RS15110 (RCG22_15110) - 3127556..3128104 (-) 549 WP_098262354.1 UvrB/UvrC motif-containing protein -
  RCG22_RS15115 (RCG22_15115) - 3128132..3128593 (-) 462 WP_098262355.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49949.47 Da        Isoelectric Point: 7.1320

>NTDB_id=872848 RCG22_RS15095 WP_308103625.1 3122299..3123681(-) (radA) [Neobacillus sp. OS1-33]
MAKRKTKFMCQECGYESAKWMGKCPGCGEWNKMVEEVEVTGVTRRGAFAHSQSGSGLLAKPMPINSIEMENEPRILTDLN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKGNQVLYISGEESMRQTKLRAERLGISSENLLVYAETNLEE
INRTIDHSNPSFVIIDSIQTVFHPDVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAISVSIASSYKDQPTRPTDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWKGPKGIELIGVSNVSEALKAALGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=872848 RCG22_RS15095 WP_308103625.1 3122299..3123681(-) (radA) [Neobacillus sp. OS1-33]
ATGGCAAAACGAAAAACAAAGTTTATGTGTCAGGAGTGCGGGTATGAGTCAGCTAAGTGGATGGGTAAATGTCCCGGCTG
TGGTGAATGGAATAAGATGGTTGAGGAAGTTGAAGTAACCGGTGTGACTAGAAGAGGTGCCTTTGCTCATTCCCAAAGCG
GGTCAGGACTATTAGCTAAACCTATGCCGATTAACTCCATAGAGATGGAAAATGAACCAAGGATTCTAACGGACTTAAAT
GAATTAAACCGGGTGCTTGGCGGGGGCGTGGTCAAGGGTTCCTTAGTGCTGATTGGCGGAGACCCCGGAATCGGTAAGTC
AACACTCCTCTTACAAGTATCTTCCCAACTCGCCAATAAAGGCAATCAGGTTTTATACATATCCGGAGAGGAATCCATGC
GACAAACCAAGCTTCGTGCGGAACGATTAGGGATATCCTCTGAAAATCTCCTCGTCTACGCTGAAACGAATCTTGAGGAA
ATCAACCGAACCATTGATCATTCGAATCCAAGCTTTGTGATCATTGATTCCATTCAGACGGTATTTCATCCAGATGTAAC
CAGTGCACCGGGAAGTGTCTCACAAGTTCGTGAGTGTACATCGGAATTAATGAGAATCGGGAAGACCAAAGGGATTGCCA
TATTTATTGTCGGGCATGTAACCAAGGAAGGCTCGATTGCGGGTCCTCGGTTGCTTGAGCATATGGTGGATACCGTTCTC
TATTTTGAAGGGGAAAGACACCATACCTACCGAATTCTAAGGGCAGTCAAAAACCGTTTCGGTTCAACCAATGAAATGGG
GATTTTTGAAATGAAAGAATTAGGTCTGGAAGAAGTGGCCAATCCTTCAGAAATATTCTTGGAAGAGCGTTCACGGGGTG
CCGCAGGCTCTACGGTAGTGGCATCAATGGAAGGGACAAGGCCGGTCCTCGTTGAAATTCAAGCATTGATATCCCCGACT
AGTTTTGGGAATCCAAGAAGAATGGCAACTGGAATCGATCATAACCGTGTGCCCCTATTGATGGCCGTATTAGAAAAACG
AGTCGGAATGCTCCTTCAGAATCAGGATGCCTACTTGAAAGTTGCAGGGGGCGTAAAATTAGATGAACCGGCGATTGATC
TAGCCATATCTGTGAGTATTGCTTCGAGTTATAAAGATCAACCAACAAGACCAACCGATTGTATTATTGGTGAAGTCGGG
TTAACCGGTGAAGTGAGAAGGGTATCTAGGATTGAGCAGCGCGTCCAGGAAGCAGCCAAGCTGGGATTTGAACGGGTCAT
CTTGCCGGCTAATAATCTTGGCGGCTGGAAGGGACCAAAGGGAATTGAACTCATTGGGGTTTCGAACGTAAGTGAAGCAT
TAAAAGCAGCGTTGGGAGGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)

AAA domain (AAA_25)

(78-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.007

100

0.772
  radA Streptococcus mitis NCTC 12261

62.745

99.783

0.626
  radA Streptococcus pneumoniae Rx1

62.745

99.783

0.626
  radA Streptococcus pneumoniae D39

62.745

99.783

0.626
  radA Streptococcus pneumoniae R6

62.745

99.783

0.626
  radA Streptococcus pneumoniae TIGR4

62.745

99.783

0.626
  radA Streptococcus mitis SK321

62.527

99.783

0.624