Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RCG22_RS09355 Genome accession   NZ_CP133262
Coordinates   1937056..1938879 (-) Length   607 a.a.
NCBI ID   WP_308106621.1    Uniprot ID   -
Organism   Neobacillus sp. OS1-33     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932056..1943879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG22_RS09325 (RCG22_09325) - 1932479..1933273 (-) 795 WP_098260930.1 NAD kinase -
  RCG22_RS09330 (RCG22_09330) - 1933327..1933965 (-) 639 WP_098260929.1 GTP pyrophosphokinase family protein -
  RCG22_RS09335 (RCG22_09335) - 1933985..1934350 (-) 366 WP_308106618.1 hypothetical protein -
  RCG22_RS09340 (RCG22_09340) - 1934471..1935070 (+) 600 WP_308106619.1 CYTH domain-containing protein -
  RCG22_RS09345 (RCG22_09345) - 1935267..1935674 (+) 408 WP_098260926.1 globin -
  RCG22_RS09350 (RCG22_09350) - 1935643..1936536 (+) 894 WP_374049435.1 ClpXP adapter SpxH family protein -
  RCG22_RS09355 (RCG22_09355) pepF 1937056..1938879 (-) 1824 WP_308106621.1 oligoendopeptidase F Regulator
  RCG22_RS09360 (RCG22_09360) - 1939024..1940220 (-) 1197 WP_308106622.1 competence protein CoiA family protein -
  RCG22_RS09365 (RCG22_09365) cls 1940323..1941834 (-) 1512 WP_308107117.1 cardiolipin synthase -
  RCG22_RS09370 (RCG22_09370) mecA 1941913..1942584 (-) 672 WP_098260922.1 adaptor protein MecA -
  RCG22_RS09375 (RCG22_09375) spxA 1942892..1943287 (-) 396 WP_098260921.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69777.31 Da        Isoelectric Point: 4.9007

>NTDB_id=872833 RCG22_RS09355 WP_308106621.1 1937056..1938879(-) (pepF) [Neobacillus sp. OS1-33]
MANETAVKSLPARNEIPAQDTWKLEDIFSSDQEWEKEFQEVKGQIPGIKNFEGKLGESAETLYEALQFQDKLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASQLAFIVPEILSLDESKVTSFLNEKPELKLYEHALAEINLQRPHVLTAE
QEALLAEASEVMDASSNTFGMLNNADLEFPTIKDENGEEVEITHGRYIRFLESADPRVRQEAFKAVYKTYGDFKNTFSST
LSGNVKKDNFNARVRKYNSARHAALSANNIPESVYDNLVNAVTDNLHLLHRYIKLRKKVLGLNELHMYDLFTPLVKDVKM
EIKYEEAKDLVIKGLAPLGEEYSNILKEGFENRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHIIHQKAQ
NNEALTADALTESYYELNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIDF
LSSGSSDYPIEVLKKAGVDMTSADPIKNACKVFEEKLNELEQLLSKV

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=872833 RCG22_RS09355 WP_308106621.1 1937056..1938879(-) (pepF) [Neobacillus sp. OS1-33]
ATGGCAAATGAAACTGCAGTAAAATCACTGCCAGCAAGAAATGAGATTCCAGCGCAAGATACATGGAAATTAGAAGATAT
TTTCTCAAGTGACCAGGAGTGGGAAAAGGAGTTTCAAGAGGTAAAAGGCCAAATCCCTGGGATAAAAAACTTTGAAGGGA
AATTAGGAGAAAGTGCAGAAACACTTTATGAAGCTCTTCAATTCCAAGATAAACTGTTAGAACGGATTGGAAAACTTTAT
ACATATTCACATATGCGTTATGACCAAGACACCACGAACTCATTTTACCAAGGTTTAGATGACAGAATGAAGAATCTGTA
TTCACAGGCAGCGAGCCAGTTAGCATTTATTGTTCCAGAAATTCTCTCACTAGATGAGAGCAAAGTAACTAGCTTCTTAA
ATGAGAAACCGGAATTAAAATTGTATGAGCATGCTTTAGCTGAAATTAATTTGCAAAGACCGCATGTCCTGACAGCGGAA
CAGGAAGCATTGCTCGCTGAGGCGAGTGAAGTGATGGATGCTTCTAGCAATACGTTTGGGATGTTGAACAATGCAGACCT
CGAATTTCCAACAATTAAAGATGAAAATGGCGAAGAGGTAGAAATTACTCATGGCCGATATATCCGCTTTTTAGAAAGCG
CAGACCCTAGAGTAAGACAAGAGGCCTTTAAGGCAGTATATAAGACGTATGGTGATTTTAAAAATACATTTTCAAGTACA
TTAAGTGGGAATGTGAAGAAGGATAATTTTAATGCCAGGGTAAGAAAGTATAATTCAGCCAGACATGCTGCCCTTTCTGC
AAACAATATCCCAGAAAGCGTTTATGATAACCTTGTTAATGCGGTTACGGATAATCTTCATTTATTACATCGCTATATCA
AGCTTCGTAAAAAAGTCCTAGGGCTTAATGAGCTTCATATGTATGATTTATTTACACCTCTTGTCAAAGATGTGAAAATG
GAAATTAAATACGAAGAGGCAAAAGATTTAGTTATTAAAGGGTTAGCCCCGTTAGGTGAGGAATATTCGAATATATTAAA
AGAAGGTTTTGAAAATCGCTGGGTCGATGTCCATGAAAATAAAGGAAAGCGGAGTGGGGCCTATTCTTCAGGGGCATATG
GTACACATCCGTATATTCTGATGAATTGGCAGGATAATGTAAATAATTTATTTACACTTGCCCATGAATTTGGCCATTCT
GTACACAGTTATTATACAAGAAAATCACAGCCGTATCCTTATGGCAACTATTCTATTTTCGTTGCTGAAGTGGCTTCAAC
ATGTAATGAAGCACTTCTTAATGACTATCTATTGAAAACAATTGATGATGAACAGAAACGTATTTACTTACTCAACCATT
ATTTAGAAGGCTTTAGAGGCACCGTGTTCCGGCAAACTATGTTTGCAGAGTTTGAACACATAATCCATCAAAAGGCCCAA
AATAACGAGGCGTTAACTGCAGACGCATTAACCGAAAGCTATTATGAATTAAATAAGAAATATTTCGGTGAAGAGGATAT
TGTAATTGATGAGGAAATCGGGTTAGAATGGGCAAGAATTCCACATTTTTATTATAATTATTATGTTTACCAATATGCCA
CTGGTTTTAGTGCAGCTACTGCGTTAAGTAAGCAAATTCTTGAAGAGGGTGAGCCGGCAGTCAAACGATACATCGACTTC
TTAAGTTCAGGAAGTTCAGATTATCCAATCGAAGTCCTGAAAAAAGCTGGTGTAGATATGACAAGCGCTGATCCAATCAA
GAATGCTTGTAAGGTATTTGAAGAGAAACTGAATGAATTAGAACAATTATTATCAAAAGTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.993

98.188

0.481