Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCF70_RS10800 Genome accession   NZ_CP133247
Coordinates   2177793..2179166 (-) Length   457 a.a.
NCBI ID   WP_107359567.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2172793..2184166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS10775 (RCF70_10755) cysE 2173045..2173695 (-) 651 WP_259335918.1 serine O-acetyltransferase -
  RCF70_RS10780 (RCF70_10760) gltX 2174011..2175465 (-) 1455 WP_107359571.1 glutamate--tRNA ligase -
  RCF70_RS10785 (RCF70_10765) ispF 2175542..2176021 (-) 480 WP_107359570.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RCF70_RS10790 (RCF70_10770) ispD 2176014..2176712 (-) 699 WP_107364314.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCF70_RS10795 (RCF70_10775) - 2176712..2177776 (-) 1065 WP_107359568.1 PIN/TRAM domain-containing protein -
  RCF70_RS10800 (RCF70_10780) radA 2177793..2179166 (-) 1374 WP_107359567.1 DNA repair protein RadA Machinery gene
  RCF70_RS10805 (RCF70_10785) - 2179293..2181779 (-) 2487 WP_107359566.1 ATP-dependent Clp protease ATP-binding subunit -
  RCF70_RS10810 (RCF70_10790) - 2181792..2182796 (-) 1005 WP_037573001.1 protein arginine kinase -
  RCF70_RS10815 (RCF70_10795) - 2182780..2183286 (-) 507 WP_375712203.1 UvrB/UvrC motif-containing protein -
  RCF70_RS10820 (RCF70_10800) - 2183331..2183792 (-) 462 WP_105985693.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50345.95 Da        Isoelectric Point: 7.9988

>NTDB_id=872798 RCF70_RS10800 WP_107359567.1 2177793..2179166(-) (radA) [Staphylococcus chromogenes strain TA]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTTHPKHGVRTQKTTQSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTNEALKYALKSR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=872798 RCF70_RS10800 WP_107359567.1 2177793..2179166(-) (radA) [Staphylococcus chromogenes strain TA]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAATTG
TGGCGCCTGGAATTCCATGGAAGAATCATTAGAGCAAAAAACAACACATCCGAAACATGGGGTACGTACGCAAAAGACGA
CACAATCAAAAATTCAAACGCTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAATTCAAC
CGTGTTTTAGGTGGCGGTATTGTCCAAGGTTCTCTTGTTTTAATAGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTGCGTTATCAAAAGAAAAGAAAGTGCTATATATTACTGGGGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCGAGTGCTTTAAACGTATTTGCAGAAACCGATTTAGAGGTGATTCATGAAGCA
GTGAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATTCAAACGATTTATCACCCAGAAATTAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCACGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTATTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGTGTCCCGAATCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCGGGGTCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTCCAAGCCCTCGTCACACCGACCACGTTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAACCGTTTAAGTCTATTGATGGCCGTATTAGAGAAAAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAGGTGGCAGGTGGCGTCAAATTAAGTGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGTGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAAACGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACCTTCCCAGAAAACATTGAAGTTATCGGTGTGACCTCAACAAACGAAGCATTAAAATATGCTT
TGAAATCTAGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.781

0.656
  radA Streptococcus pneumoniae Rx1

59.867

98.687

0.591
  radA Streptococcus pneumoniae D39

59.867

98.687

0.591
  radA Streptococcus pneumoniae R6

59.867

98.687

0.591
  radA Streptococcus pneumoniae TIGR4

59.867

98.687

0.591
  radA Streptococcus mitis NCTC 12261

59.867

98.687

0.591
  radA Streptococcus mitis SK321

59.867

98.687

0.591