Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RCF70_RS03965 Genome accession   NZ_CP133247
Coordinates   837583..838305 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain TA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 832583..843305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF70_RS03945 (RCF70_03910) - 833106..833753 (+) 648 WP_107359698.1 redox-sensing transcriptional repressor Rex -
  RCF70_RS03950 (RCF70_03915) - 833925..835007 (+) 1083 WP_419791760.1 YeeE/YedE family protein -
  RCF70_RS03955 (RCF70_03920) - 835029..835253 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  RCF70_RS03960 (RCF70_03925) - 835602..837086 (+) 1485 WP_107359700.1 sucrose-6-phosphate hydrolase -
  RCF70_RS03965 (RCF70_03930) agrA 837583..838305 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  RCF70_RS03970 agrC 838320..839627 (-) 1308 WP_419791761.1 quorum-sensing sensor histidine kinase AgrC -
  RCF70_RS03975 (RCF70_03940) agrD 839647..839781 (-) 135 WP_103159704.1 cyclic lactone autoinducer peptide AgrD -
  RCF70_RS03980 (RCF70_03945) - 839785..840348 (-) 564 WP_107359702.1 accessory gene regulator AgrB -
  RCF70_RS03985 (RCF70_03950) - 840996..841793 (-) 798 WP_107359703.1 carbon-nitrogen family hydrolase -
  RCF70_RS03990 (RCF70_03955) - 841973..843163 (+) 1191 WP_419791762.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=872777 RCF70_RS03965 WP_037575675.1 837583..838305(-) (agrA) [Staphylococcus chromogenes strain TA]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=872777 RCF70_RS03965 WP_037575675.1 837583..838305(-) (agrA) [Staphylococcus chromogenes strain TA]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTACTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATTTAACATTCGTATACAAATTGGCGGCCATGGATTT
TATTTTTAAAGATGATGTCGATGAGTTACGCACGCGCGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACTAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAATCACATCGTCTTATTGCACACTTAGATAATCGTCAAATTGAGTTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGTTGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813