Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RCF71_RS03835 Genome accession   NZ_CP133244
Coordinates   813572..814294 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 808572..819294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF71_RS03815 (RCF71_03795) - 809102..809749 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  RCF71_RS03820 (RCF71_03800) - 809922..811004 (+) 1083 WP_037575667.1 YeeE/YedE family protein -
  RCF71_RS03825 (RCF71_03805) - 811026..811250 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  RCF71_RS03830 (RCF71_03810) - 811591..813075 (+) 1485 WP_037575672.1 sucrose-6-phosphate hydrolase -
  RCF71_RS03835 (RCF71_03815) agrA 813572..814294 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  RCF71_RS03840 (RCF71_03820) agrC 814309..815607 (-) 1299 WP_037575677.1 quorum-sensing sensor histidine kinase AgrC -
  RCF71_RS03845 (RCF71_03825) agrD 815639..815773 (-) 135 WP_069191685.1 cyclic lactone autoinducer peptide AgrD -
  RCF71_RS03850 (RCF71_03830) - 815776..816339 (-) 564 WP_037575678.1 accessory gene regulator AgrB -
  RCF71_RS03855 (RCF71_03835) - 816987..817784 (-) 798 WP_037575679.1 carbon-nitrogen family hydrolase -
  RCF71_RS03860 (RCF71_03840) - 817964..819154 (+) 1191 WP_051604986.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=872743 RCF71_RS03835 WP_037575675.1 813572..814294(-) (agrA) [Staphylococcus chromogenes strain IM]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=872743 RCF71_RS03835 WP_037575675.1 813572..814294(-) (agrA) [Staphylococcus chromogenes strain IM]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATCTAACATTCGTATACAAGTTGGCGGCCATGGATTT
TATTTTTAAAGATGACGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACGAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813