Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RCF72_RS03565 Genome accession   NZ_CP133242
Coordinates   760613..761335 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain BTM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 755613..766335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF72_RS03545 (RCF72_03515) - 756143..756790 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  RCF72_RS03550 (RCF72_03520) - 756963..758045 (+) 1083 WP_037575667.1 YeeE/YedE family protein -
  RCF72_RS03555 (RCF72_03525) - 758067..758291 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  RCF72_RS03560 (RCF72_03530) - 758632..760116 (+) 1485 WP_037575672.1 sucrose-6-phosphate hydrolase -
  RCF72_RS03565 (RCF72_03535) agrA 760613..761335 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  RCF72_RS03570 (RCF72_03540) agrC 761350..762657 (-) 1308 WP_410467929.1 quorum-sensing sensor histidine kinase AgrC -
  RCF72_RS03575 (RCF72_03545) agrD 762677..762811 (-) 135 WP_103159704.1 cyclic lactone autoinducer peptide AgrD -
  RCF72_RS03580 (RCF72_03550) - 762814..763377 (-) 564 WP_311539549.1 accessory gene regulator AgrB -
  RCF72_RS03585 (RCF72_03555) - 764025..764822 (-) 798 WP_037575679.1 carbon-nitrogen family hydrolase -
  RCF72_RS03590 (RCF72_03560) - 765002..766252 (+) 1251 WP_419792280.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=872708 RCF72_RS03565 WP_037575675.1 760613..761335(-) (agrA) [Staphylococcus chromogenes strain BTM]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=872708 RCF72_RS03565 WP_037575675.1 760613..761335(-) (agrA) [Staphylococcus chromogenes strain BTM]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATCTAACATTCGTATACAAGTTGGCGGCCATGGATTT
TATTTTTAAAGATGACGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACTAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813