Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RCF73_RS11020 Genome accession   NZ_CP133240
Coordinates   2176937..2178310 (-) Length   457 a.a.
NCBI ID   WP_037572997.1    Uniprot ID   A0AAE5T2R7
Organism   Staphylococcus chromogenes strain CCM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2171937..2183310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF73_RS10995 (RCF73_10950) cysE 2172189..2172827 (-) 639 WP_258026740.1 serine O-acetyltransferase -
  RCF73_RS11000 (RCF73_10955) gltX 2173155..2174609 (-) 1455 WP_105965081.1 glutamate--tRNA ligase -
  RCF73_RS11005 (RCF73_10960) ispF 2174686..2175165 (-) 480 WP_037572986.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RCF73_RS11010 (RCF73_10965) ispD 2175158..2175856 (-) 699 WP_103158776.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RCF73_RS11015 (RCF73_10970) - 2175856..2176920 (-) 1065 WP_103158777.1 PIN/TRAM domain-containing protein -
  RCF73_RS11020 (RCF73_10975) radA 2176937..2178310 (-) 1374 WP_037572997.1 DNA repair protein RadA Machinery gene
  RCF73_RS11025 (RCF73_10980) - 2178437..2180923 (-) 2487 WP_105962895.1 ATP-dependent Clp protease ATP-binding subunit -
  RCF73_RS11030 (RCF73_10985) - 2180936..2181940 (-) 1005 WP_419790808.1 protein arginine kinase -
  RCF73_RS11035 (RCF73_10990) - 2181924..2182430 (-) 507 WP_371874999.1 UvrB/UvrC motif-containing protein -
  RCF73_RS11040 (RCF73_10995) - 2182475..2182936 (-) 462 WP_037573004.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50287.91 Da        Isoelectric Point: 7.9984

>NTDB_id=872697 RCF73_RS11020 WP_037572997.1 2176937..2178310(-) (radA) [Staphylococcus chromogenes strain CCM]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVRTQKTTQSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTNEALKYALKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=872697 RCF73_RS11020 WP_037572997.1 2176937..2178310(-) (radA) [Staphylococcus chromogenes strain CCM]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAACTG
TGGCGCATGGAATTCCATGGAAGAATCGTTAGAACAAAAAACAGCACACCCGAAACATGGGGTACGTACACAAAAGACGA
CACAATCAAAAATTCAAACGCTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAGTTTAAC
CGTGTTTTAGGTGGCGGTATTGTCCAAGGTTCTCTTGTTTTAATCGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTGCGTTATCAAAAGAAAAGAAAGTGCTATATATTACTGGAGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCTAGTGCTTTAAATGTATTTGCAGAAACGGATTTAGAGGTGATTCATGAAGCA
GTAAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATTCAAACGATTTATCACCCAGAAATTAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCACGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTATTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGTGTCCCGAATCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCGGGGTCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTCCAAGCCCTCGTCACACCGACCACATTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAACCGTTTAAGTCTATTGATGGCCGTATTAGAGAAAAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAAGTGGCAGGTGGCGTCAAATTAAGTGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGTGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAAACGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACCTTCCCAGAAAACATTGAAGTTATCGGTGTGACCTCAACAAACGAAGCATTAAAATATGCTT
TGAAATCTAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

99.781

0.659
  radA Streptococcus pneumoniae Rx1

59.867

98.687

0.591
  radA Streptococcus pneumoniae D39

59.867

98.687

0.591
  radA Streptococcus pneumoniae R6

59.867

98.687

0.591
  radA Streptococcus pneumoniae TIGR4

59.867

98.687

0.591
  radA Streptococcus mitis NCTC 12261

59.867

98.687

0.591
  radA Streptococcus mitis SK321

59.867

98.687

0.591