Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RCF73_RS03955 Genome accession   NZ_CP133240
Coordinates   806477..807199 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain CCM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 801477..812199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF73_RS03935 (RCF73_03905) - 802008..802655 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  RCF73_RS03940 (RCF73_03910) - 802827..803909 (+) 1083 WP_419791325.1 YeeE/YedE family protein -
  RCF73_RS03945 (RCF73_03915) - 803931..804155 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  RCF73_RS03950 (RCF73_03920) - 804496..805980 (+) 1485 WP_419791326.1 sucrose-6-phosphate hydrolase -
  RCF73_RS03955 (RCF73_03925) agrA 806477..807199 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  RCF73_RS03960 agrC 807214..808512 (-) 1299 WP_107367373.1 quorum-sensing sensor histidine kinase AgrC -
  RCF73_RS03965 (RCF73_03935) agrD 808544..808678 (-) 135 WP_105986645.1 cyclic lactone autoinducer peptide AgrD -
  RCF73_RS03970 (RCF73_03940) - 808683..809246 (-) 564 WP_037575678.1 accessory gene regulator AgrB -
  RCF73_RS03975 (RCF73_03945) - 809894..810691 (-) 798 WP_419791327.1 carbon-nitrogen family hydrolase -
  RCF73_RS03980 (RCF73_03950) - 810871..812031 (+) 1161 WP_419791328.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=872676 RCF73_RS03955 WP_037575675.1 806477..807199(-) (agrA) [Staphylococcus chromogenes strain CCM]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=872676 RCF73_RS03955 WP_037575675.1 806477..807199(-) (agrA) [Staphylococcus chromogenes strain CCM]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATCTAACATTCGTATACAAGTTGGCGGCCATGGATTT
TATTTTTAAAGATGACGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACTAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813