Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RCF74_RS04825 Genome accession   NZ_CP133235
Coordinates   1014520..1015149 (+) Length   209 a.a.
NCBI ID   WP_002507206.1    Uniprot ID   -
Organism   Staphylococcus equorum strain CCM     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1009520..1020149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF74_RS04795 (RCF74_04775) - 1009544..1010263 (+) 720 WP_002507200.1 type 1 glutamine amidotransferase -
  RCF74_RS04800 (RCF74_04780) - 1010362..1011348 (-) 987 WP_021339816.1 FUSC family protein -
  RCF74_RS04805 (RCF74_04785) map 1011529..1012281 (+) 753 WP_002507202.1 type I methionyl aminopeptidase -
  RCF74_RS04810 (RCF74_04790) - 1012386..1012772 (+) 387 WP_002507203.1 hypothetical protein -
  RCF74_RS04815 (RCF74_04795) liaF 1012789..1013490 (+) 702 WP_002507204.1 cell wall-active antibiotics response protein LiaF -
  RCF74_RS04820 (RCF74_04800) vraS 1013487..1014530 (+) 1044 WP_002511392.1 sensor histidine kinase Regulator
  RCF74_RS04825 (RCF74_04805) vraR 1014520..1015149 (+) 630 WP_002507206.1 response regulator transcription factor Regulator
  RCF74_RS04830 (RCF74_04810) - 1015345..1016511 (-) 1167 WP_002511391.1 YihY/virulence factor BrkB family protein -
  RCF74_RS04835 (RCF74_04815) - 1016742..1017026 (-) 285 WP_002507208.1 hypothetical protein -
  RCF74_RS04840 (RCF74_04820) - 1017033..1017497 (-) 465 WP_002507209.1 low molecular weight protein-tyrosine-phosphatase -
  RCF74_RS04845 (RCF74_04825) - 1017653..1017835 (+) 183 WP_226956897.1 DUF1128 family protein -
  RCF74_RS04850 (RCF74_04830) - 1017851..1019089 (+) 1239 WP_064782814.1 aminopeptidase -
  RCF74_RS04855 (RCF74_04835) - 1019184..1019705 (+) 522 WP_002511389.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.25 Da        Isoelectric Point: 4.7666

>NTDB_id=872648 RCF74_RS04825 WP_002507206.1 1014520..1015149(+) (vraR) [Staphylococcus equorum strain CCM]
MTIKVLFVDDHEMVRIGISSYLSTQPDIDIVGEGQSGKDAIEKAHQLNPDLILMDLLMDDMDGVDATEQIKKDLPHIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYKNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872648 RCF74_RS04825 WP_002507206.1 1014520..1015149(+) (vraR) [Staphylococcus equorum strain CCM]
ATGACGATTAAAGTTTTGTTTGTTGATGATCATGAAATGGTTCGAATTGGAATTTCTAGTTACTTATCTACACAGCCAGA
TATTGATATTGTAGGGGAAGGTCAGTCAGGAAAAGATGCGATTGAAAAGGCTCATCAACTAAATCCAGATTTAATCTTAA
TGGACTTGCTTATGGACGATATGGATGGTGTCGATGCTACCGAGCAAATTAAAAAAGACTTACCCCATATTAAAGTTGTA
ATGTTAACAAGTTACATTGAAGATAATGAAGTATATCGTGCTTTAGATTCTGGCGTAGACAGCTATATTTTGAAAACGAC
TAGTGCTAGTGATATAGCCGAGGCTATTCGTAAAACGTATAAAAATGAGTCTGTATTTGAAGCTGAAGTGCTTGTGAAGA
TGAGAAATAGAATGAAACAACGTGCCGAATTATATGAAATGTTAACGGAACGAGAAATGGAAATTCTATTACTTATCGCA
AAAGGTTACTCAAACCAAGAAATTGCGAGTGCATCACACATAACGATTAAAACAGTAAAAACACATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCAGTTATTTATGCATTCCAGCATAATTTAATACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885