Detailed information NTG0872576

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Q5531_RS18180
• Genome accession: NZ_CP133222
• Coordinates: 3791844..3792947 (+)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain D420Sm1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3786844..3797947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5531_RS18155 (Q5531_18155)	-	3788721..3789107 (+)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-
Q5531_RS18160 (Q5531_18160)	-	3789115..3790248 (-)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
Q5531_RS18165 (Q5531_18165)	-	3790312..3790563 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
Q5531_RS18170 (Q5531_18170)	coaD	3790618..3791127 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
Q5531_RS18175 (Q5531_18175)	rsmD	3791148..3791768 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
Q5531_RS18180 (Q5531_18180)	pilA	3791844..3792947 (+)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
Q5531_RS18185 (Q5531_18185)	-	3792994..3794592 (-)	1599	Protein_3571	CYTH and CHAD domain-containing protein	-
Q5531_RS18190 (Q5531_18190)	phnE	3794776..3795597 (-)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
Q5531_RS18195 (Q5531_18195)	phnE	3795594..3796463 (-)	870	WP_023998122.1	phosphonate ABC transporter, permease protein PhnE	-
Q5531_RS18200 (Q5531_18200)	-	3796481..3796966 (-)	486	Protein_3574	phosphonate ABC transporter ATP-binding protein	-
Q5531_RS18205 (Q5531_18205)	-	3796960..3797910 (-)	951	WP_005013747.1	IS481-like element IS481 family transposase	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=872576 Q5531_RS18180 WP_023853086.1 3791844..3792947(+) (pilA) [Bordetella pertussis strain D420Sm1]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=872576 Q5531_RS18180 WP_023853086.1 3791844..3792947(+) (pilA) [Bordetella pertussis strain D420Sm1]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507