Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHU53_RS19520 Genome accession   NZ_CP148474
Coordinates   3952210..3952839 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Z1323CEC0005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3947210..3957839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU53_RS19500 (WHU53_19475) ycbZ 3947599..3949359 (-) 1761 WP_000156518.1 Lon protease family protein -
  WHU53_RS19505 (WHU53_19480) matP 3949545..3949997 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHU53_RS19510 (WHU53_19485) ompA 3950073..3951125 (-) 1053 WP_032202393.1 porin OmpA -
  WHU53_RS19515 (WHU53_19490) sulA 3951482..3951991 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  WHU53_RS19520 (WHU53_19495) sxy/tfoX 3952210..3952839 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHU53_RS19525 (WHU53_19500) yccS 3952802..3954964 (-) 2163 WP_000875061.1 YccS family putative transporter -
  WHU53_RS19530 (WHU53_19505) yccF 3954974..3955420 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WHU53_RS19535 (WHU53_19510) helD 3955543..3957597 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=872568 WHU53_RS19520 WP_000839153.1 3952210..3952839(+) (sxy/tfoX) [Escherichia coli strain Z1323CEC0005]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=872568 WHU53_RS19520 WP_000839153.1 3952210..3952839(+) (sxy/tfoX) [Escherichia coli strain Z1323CEC0005]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1