Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RCF98_RS09385 Genome accession   NZ_CP133218
Coordinates   1944195..1944692 (-) Length   165 a.a.
NCBI ID   WP_038140874.1    Uniprot ID   -
Organism   Thiothrix lacustris strain MK1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939195..1949692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF98_RS09365 (RCF98_09365) - 1940294..1942123 (-) 1830 WP_028488811.1 hypothetical protein -
  RCF98_RS09370 (RCF98_09370) - 1942137..1943276 (-) 1140 WP_028488810.1 methyl-accepting chemotaxis protein -
  RCF98_RS09375 (RCF98_09375) - 1943273..1943803 (-) 531 WP_028488809.1 chemotaxis protein CheW -
  RCF98_RS09380 (RCF98_09380) - 1943796..1944182 (-) 387 WP_028488808.1 response regulator -
  RCF98_RS09385 (RCF98_09385) pilG 1944195..1944692 (-) 498 WP_038140874.1 PleD family two-component system response regulator Regulator
  RCF98_RS09390 (RCF98_09390) - 1944870..1945733 (-) 864 WP_028488807.1 metallophosphoesterase -
  RCF98_RS09395 (RCF98_09395) - 1945758..1946372 (-) 615 WP_028488806.1 NAD(P)H-dependent oxidoreductase -
  RCF98_RS09400 (RCF98_09400) - 1946444..1946908 (-) 465 WP_308893264.1 DsrE/DsrF/DrsH-like family protein -
  RCF98_RS09405 (RCF98_09405) - 1946993..1947325 (-) 333 WP_028488804.1 rhodanese-like domain-containing protein -
  RCF98_RS09410 (RCF98_09410) - 1947419..1948759 (-) 1341 WP_308396824.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18306.04 Da        Isoelectric Point: 4.5810

>NTDB_id=872551 RCF98_RS09385 WP_038140874.1 1944195..1944692(-) (pilG) [Thiothrix lacustris strain MK1]
MPDNLNNTLERDLTGLKVVVVDDSKTILRTAEVLLSEQGCWVVTASDGFESLSKISSFKPDVIFVDIMMPRLDGYQTCAL
IKANRQYRDTPVILLSSKDSIFDMARGRLAGSDKYLTKPFTKDDLLTAIYTHVKQPKAVETAETIPPAAESKPVEPVPFI
DLIDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=872551 RCF98_RS09385 WP_038140874.1 1944195..1944692(-) (pilG) [Thiothrix lacustris strain MK1]
ATGCCTGATAACCTGAACAATACGCTTGAACGCGATCTGACCGGCCTGAAAGTCGTGGTAGTGGACGACAGCAAGACCAT
CCTGCGAACTGCTGAGGTTTTGCTGAGTGAGCAAGGCTGCTGGGTAGTGACAGCCAGTGATGGTTTTGAGTCACTATCTA
AAATTTCATCCTTTAAACCCGATGTTATTTTCGTCGATATCATGATGCCACGCCTAGATGGTTATCAGACCTGCGCCTTG
ATCAAGGCCAACCGCCAATACCGTGATACCCCCGTCATTTTACTATCGAGTAAAGACAGTATTTTCGACATGGCTCGCGG
GCGACTAGCGGGTTCTGACAAATACCTCACCAAGCCGTTCACCAAAGACGATTTACTGACGGCTATTTATACTCATGTCA
AACAGCCAAAGGCTGTTGAAACAGCAGAAACAATACCACCTGCTGCTGAGTCTAAACCCGTTGAGCCAGTTCCTTTTATT
GACCTCATTGACGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(18-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

65.6

75.758

0.497