Detailed information NTG0872531

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RCG00_RS09555
• Genome accession: NZ_CP133217
• Coordinates: 1718783..1719784 (-)
• Length: 333 a.a.
• NCBI ID: WP_202716247.1
• Uniprot ID: -
• Organism: Thiothrix subterranea strain DNT52
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1713783..1724784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCG00_RS09530 (RCG00_09530)	-	1713952..1715142 (+)	1191	WP_308872420.1	ABC transporter permease	-
RCG00_RS09535 (RCG00_09535)	-	1715139..1716806 (+)	1668	WP_308872421.1	dipeptide ABC transporter ATP-binding protein	-
RCG00_RS09540 (RCG00_09540)	-	1716813..1717031 (-)	219	WP_202716244.1	hypothetical protein	-
RCG00_RS09545 (RCG00_09545)	ftsX	1717144..1718133 (-)	990	WP_202716245.1	permease-like cell division protein FtsX	-
RCG00_RS09550 (RCG00_09550)	ftsE	1718133..1718777 (-)	645	WP_236498664.1	cell division ATP-binding protein FtsE	-
RCG00_RS09555 (RCG00_09555)	pilA	1718783..1719784 (-)	1002	WP_202716247.1	signal recognition particle-docking protein FtsY	Machinery gene
RCG00_RS09560 (RCG00_09560)	-	1719826..1721250 (+)	1425	WP_308872423.1	pitrilysin family protein	-
RCG00_RS09565 (RCG00_09565)	-	1721254..1722567 (+)	1314	WP_308872425.1	pitrilysin family protein	-
RCG00_RS09570 (RCG00_09570)	rsmD	1722557..1723105 (+)	549	WP_308872427.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RCG00_RS09575 (RCG00_09575)	-	1723271..1723798 (+)	528	WP_308872428.1	C40 family peptidase	-
RCG00_RS09580 (RCG00_09580)	-	1723914..1724609 (+)	696	WP_202716253.1	mobilization protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 35898.39 Da
• Isoelectric Point: 6.0600

>NTDB_id=872531 RCG00_RS09555 WP_202716247.1 1718783..1719784(-) (pilA) [Thiothrix subterranea strain DNT52]
MFGFGKKKKPELPDATTVVPQAPAPAEGLFARLKRGLSKTSHALTEGMETLVVGKKQIDDDVLEELETRLLTADVGMEAT
REIMSDLTSRVKRAELADMDALMQALYNKMHRILRPAAQPLEIDGSHQPFVLLMVGINGAGKTTTIGKLAKKFQQDGKSV
MLAAGDTFRAAAVEQLTIWGERNNIPVIAQGSGADSASVIFDAFQAAKARKIDVLLADTAGRLHTQTNLMDELKKVKRVI
QKFDGTAPHEIMLIVDASIGQNALVQAKQFNEALGLTGITVTKLDGTAKGGILFAIAQQLNIPVRFIGVGESIDDLQEFD
AYEFTSALLAGND

Nucleotide

• Length: 1002 bp

>NTDB_id=872531 RCG00_RS09555 WP_202716247.1 1718783..1719784(-) (pilA) [Thiothrix subterranea strain DNT52]
ATGTTTGGATTCGGAAAGAAAAAAAAGCCGGAATTACCTGATGCCACTACGGTAGTTCCGCAAGCCCCTGCCCCGGCGGA
AGGTTTATTTGCGCGGTTAAAACGCGGTCTATCAAAAACCAGCCATGCCCTTACCGAGGGCATGGAAACGCTGGTGGTGG
GCAAAAAGCAAATCGACGACGATGTGCTGGAGGAGCTGGAAACGCGCTTACTTACCGCCGACGTTGGCATGGAAGCCACC
CGCGAGATCATGAGCGACCTCACCAGCCGCGTGAAACGCGCGGAACTCGCGGATATGGATGCGCTGATGCAAGCGCTTTA
CAATAAAATGCACCGCATTCTGCGCCCTGCCGCACAACCCTTGGAAATCGACGGCTCACACCAGCCGTTTGTGCTGCTGA
TGGTCGGCATCAATGGCGCGGGTAAAACCACCACGATTGGCAAACTGGCGAAAAAATTCCAGCAAGACGGCAAATCAGTA
ATGTTAGCAGCGGGTGACACCTTCCGCGCTGCCGCCGTCGAACAGCTCACCATTTGGGGCGAACGCAATAATATTCCGGT
GATTGCGCAAGGCAGTGGCGCGGATTCCGCCTCGGTGATTTTCGATGCGTTTCAAGCCGCCAAAGCGCGTAAAATCGACG
TATTGCTGGCGGATACTGCCGGACGCTTGCACACTCAAACCAATTTGATGGATGAGCTGAAAAAGGTCAAACGGGTTATT
CAGAAATTCGACGGCACTGCACCGCATGAAATCATGCTGATTGTGGATGCCAGCATTGGTCAAAATGCTTTGGTACAAGC
CAAACAATTCAACGAAGCATTGGGGCTGACGGGAATCACCGTCACTAAACTGGACGGAACAGCCAAAGGCGGGATTCTGT
TCGCGATTGCCCAACAACTTAACATTCCGGTACGCTTTATTGGCGTGGGTGAAAGCATCGACGACTTGCAAGAATTTGAT
GCGTATGAATTCACCAGCGCCCTGCTCGCCGGAAACGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (129-329)

• SRP54-type protein, helical bundle domain (SRP54_N) (44-110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.278	90.691	0.529