Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RCG00_RS03790 Genome accession   NZ_CP133217
Coordinates   571240..571719 (-) Length   159 a.a.
NCBI ID   WP_308136204.1    Uniprot ID   A0AA51QZZ5
Organism   Thiothrix subterranea strain DNT52     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 566240..576719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG00_RS03770 (RCG00_03770) - 567350..569170 (-) 1821 WP_202715490.1 hypothetical protein -
  RCG00_RS03775 (RCG00_03775) - 569184..570323 (-) 1140 WP_308136205.1 methyl-accepting chemotaxis protein -
  RCG00_RS03780 (RCG00_03780) - 570323..570850 (-) 528 WP_202715488.1 chemotaxis protein CheW -
  RCG00_RS03785 (RCG00_03785) - 570843..571229 (-) 387 WP_202715487.1 response regulator -
  RCG00_RS03790 (RCG00_03790) pilG 571240..571719 (-) 480 WP_308136204.1 response regulator Regulator
  RCG00_RS03795 (RCG00_03795) - 571864..572727 (-) 864 WP_202715485.1 metallophosphoesterase -
  RCG00_RS03800 (RCG00_03800) - 572743..573357 (-) 615 WP_202715484.1 NAD(P)H-dependent oxidoreductase -
  RCG00_RS03805 (RCG00_03805) - 573429..573893 (-) 465 WP_202715483.1 DsrE/DsrF/DrsH-like family protein -
  RCG00_RS03810 (RCG00_03810) - 573983..574315 (-) 333 WP_202715482.1 rhodanese-like domain-containing protein -
  RCG00_RS03815 (RCG00_03815) ppx 574415..575914 (-) 1500 WP_308136203.1 exopolyphosphatase -
  RCG00_RS03820 (RCG00_03820) - 575918..576301 (-) 384 WP_308136202.1 RidA family protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17596.33 Da        Isoelectric Point: 4.5619

>NTDB_id=872521 RCG00_RS03790 WP_308136204.1 571240..571719(-) (pilG) [Thiothrix subterranea strain DNT52]
MPDTLNNTPERDLTGLKVVVVDDSKTILRTAEVLLTEQGCWVVTAGDGFESLSKIASFKPDVIFVDIMMPRLDGYQTCAL
IKANRQYRDTPVILLSSKDSIFDMARGRLAGSDKYLTKPFTKDDLLAAIYTHVKLPEAPKPPVAPAETPELPFIDLIDE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=872521 RCG00_RS03790 WP_308136204.1 571240..571719(-) (pilG) [Thiothrix subterranea strain DNT52]
ATGCCTGATACCCTAAATAATACGCCTGAACGCGACCTGACCGGCCTGAAAGTTGTCGTCGTGGATGACAGCAAAACCAT
TCTGCGCACGGCTGAAGTGTTACTCACTGAGCAAGGCTGCTGGGTGGTGACTGCCGGTGATGGTTTTGAGTCCTTATCAA
AAATAGCCTCCTTTAAACCGGATGTTATTTTCGTGGATATTATGATGCCACGCTTGGATGGCTACCAAACTTGCGCCCTC
ATCAAAGCAAACCGCCAGTACCGCGACACGCCGGTTATCCTGTTATCGAGCAAAGACAGCATTTTTGACATGGCGCGGGG
GCGTTTAGCGGGTTCTGATAAGTACCTAACCAAACCGTTCACCAAAGACGATTTGCTGGCGGCTATTTACACGCACGTCA
AGTTGCCCGAAGCGCCTAAGCCGCCGGTTGCGCCAGCAGAAACCCCTGAATTGCCTTTCATTGATTTGATTGACGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(18-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

66.935

77.987

0.522