Detailed information NTG0872430

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RCF95_RS13275
• Genome accession: NZ_CP133197
• Coordinates: 2212907..2213908 (-)
• Length: 333 a.a.
• NCBI ID: WP_202716247.1
• Uniprot ID: -
• Organism: Thiothrix subterranea strain DNT53
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2207907..2218908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCF95_RS13245	-	2208039..2208737 (+)	699	WP_308872863.1	hypothetical protein	-
RCF95_RS13250	-	2208715..2209230 (+)	516	WP_308875055.1	ABC transporter permease	-
RCF95_RS13255	-	2209227..2210930 (+)	1704	WP_308133696.1	dipeptide ABC transporter ATP-binding protein	-
RCF95_RS13260	-	2210937..2211155 (-)	219	WP_202716244.1	hypothetical protein	-
RCF95_RS13265	ftsX	2211268..2212257 (-)	990	WP_202716245.1	permease-like cell division protein FtsX	-
RCF95_RS13270	ftsE	2212257..2212901 (-)	645	WP_308133695.1	cell division ATP-binding protein FtsE	-
RCF95_RS13275	pilA	2212907..2213908 (-)	1002	WP_202716247.1	signal recognition particle-docking protein FtsY	Machinery gene
RCF95_RS13280	-	2213950..2215374 (+)	1425	WP_308872865.1	pitrilysin family protein	-
RCF95_RS13285	-	2215378..2216691 (+)	1314	WP_308133693.1	pitrilysin family protein	-
RCF95_RS13290	rsmD	2216681..2217000 (+)	320	Protein_2612	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RCF95_RS13295	-	2217038..2217229 (+)	192	WP_308872867.1	RsmD family RNA methyltransferase	-
RCF95_RS13300	-	2217380..2217922 (+)	543	WP_308133691.1	C40 family peptidase	-
RCF95_RS13305	-	2218038..2218733 (+)	696	WP_308133690.1	mobilization protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 35898.39 Da
• Isoelectric Point: 6.0600

>NTDB_id=872430 RCF95_RS13275 WP_202716247.1 2212907..2213908(-) (pilA) [Thiothrix subterranea strain DNT53]
MFGFGKKKKPELPDATTVVPQAPAPAEGLFARLKRGLSKTSHALTEGMETLVVGKKQIDDDVLEELETRLLTADVGMEAT
REIMSDLTSRVKRAELADMDALMQALYNKMHRILRPAAQPLEIDGSHQPFVLLMVGINGAGKTTTIGKLAKKFQQDGKSV
MLAAGDTFRAAAVEQLTIWGERNNIPVIAQGSGADSASVIFDAFQAAKARKIDVLLADTAGRLHTQTNLMDELKKVKRVI
QKFDGTAPHEIMLIVDASIGQNALVQAKQFNEALGLTGITVTKLDGTAKGGILFAIAQQLNIPVRFIGVGESIDDLQEFD
AYEFTSALLAGND

Nucleotide

• Length: 1002 bp

>NTDB_id=872430 RCF95_RS13275 WP_202716247.1 2212907..2213908(-) (pilA) [Thiothrix subterranea strain DNT53]
ATGTTTGGATTCGGAAAGAAAAAAAAGCCGGAATTACCTGATGCCACCACGGTAGTTCCTCAAGCCCCTGCCCCAGCGGA
AGGTTTGTTTGCGCGGTTAAAGCGCGGTCTGTCAAAAACCAGCCATGCCCTTACCGAGGGAATGGAAACGCTGGTGGTTG
GCAAAAAGCAAATCGACGACGATGTGCTGGAAGAGCTGGAAACCCGCTTACTCACCGCCGACGTCGGCATGGAAGCGACC
CGCGAGATCATGAGCGACCTTACCAGCCGCGTCAAACGGGCGGAACTCGCGGATATGGATGCGCTCATGCAAGCGCTCTA
CAATAAAATGCACCGCATTCTGCGCCCTGCCGCGCAACCCTTGGAAATCGACGGCTCACACCAACCGTTTGTGCTGCTGA
TGGTTGGCATCAATGGCGCGGGCAAAACAACCACGATTGGCAAGCTTGCCAAAAAATTCCAGCAAGACGGCAAATCGGTA
ATGTTAGCAGCAGGTGACACTTTCCGCGCCGCCGCCGTGGAACAGCTCACCATCTGGGGCGAACGCAATAATATTCCGGT
GATTGCCCAAGGCAGTGGCGCGGATTCCGCCTCGGTGATTTTCGATGCGTTTCAAGCCGCCAAAGCGCGTAAAATCGACG
TGTTGCTGGCGGATACTGCCGGACGCTTGCACACTCAAACCAATTTGATGGATGAGCTGAAAAAGGTCAAACGGGTTATT
CAGAAATTCGACGGCACTGCACCGCATGAAATCATGCTGATTGTGGATGCCAGCATTGGTCAAAATGCTTTGGTACAAGC
CAAACAATTCAACGAAGCATTGGGGCTGACGGGAATCACCGTCACTAAACTGGACGGGACTGCCAAAGGCGGGATTCTGT
TCGCGATTGCCCAACAACTTAACATTCCGGTACGCTTTATTGGCGTGGGTGAAAGCATCGACGACTTGCAAGAATTTGAT
GCGTATGAATTCACCAGCGCCCTGCTCGCCGGAAACGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (129-329)

• SRP54-type protein, helical bundle domain (SRP54_N) (44-110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.278	90.691	0.529