Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   RCF95_RS08495 Genome accession   NZ_CP133197
Coordinates   1408807..1410189 (-) Length   460 a.a.
NCBI ID   WP_308874604.1    Uniprot ID   -
Organism   Thiothrix subterranea strain DNT53     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403807..1415189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF95_RS08460 purE 1403838..1404341 (-) 504 WP_308134362.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RCF95_RS08465 - 1404419..1405317 (+) 899 Protein_1666 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RCF95_RS08470 - 1405347..1406363 (+) 1017 WP_308134364.1 NAD-dependent epimerase -
  RCF95_RS08475 - 1406398..1407111 (+) 714 WP_308874600.1 type II secretion system protein N -
  RCF95_RS08480 - 1407063..1407389 (+) 327 WP_308874601.1 PDZ domain-containing protein -
  RCF95_RS08485 - 1407471..1408637 (+) 1167 WP_308874602.1 NAD(P)/FAD-dependent oxidoreductase -
  RCF95_RS08490 - 1408619..1408810 (+) 192 WP_308874603.1 hypothetical protein -
  RCF95_RS08495 priA 1408807..1410189 (-) 1383 WP_308874604.1 primosomal protein N' Machinery gene
  RCF95_RS08500 - 1410165..1410845 (-) 681 WP_308874605.1 DEAD/DEAH box helicase family protein -
  RCF95_RS08505 - 1411319..1412053 (+) 735 WP_308874606.1 Fic family protein -
  RCF95_RS08510 - 1412116..1413738 (+) 1623 WP_308134369.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51273.84 Da        Isoelectric Point: 9.4620

>NTDB_id=872420 RCF95_RS08495 WP_308874604.1 1408807..1410189(-) (priA) [Thiothrix subterranea strain DNT53]
MACLHSGLSDGDRLKAWLQARSGAAQIIIGTRSAIFTPAPHLALIVIDEEHDASLKQQEGFRYHARDLAIKRAQMLDIPI
LMEAATPSLEALYNAQTSRFHYARLERRPGAARKPDLQIQDTRPFELQAGLTPQSLQAIRATLARGEQIMVFLNRRGFAP
TLFCPSCGWHANCDHCSVKMTWHARRNRLVCHHCGAEQTTPLHCPVCKNPQLTTQGQGTERLELTLQTTFPDALVVRIDR
DSTSRKGQLEDKLSTVRSNDPLILVGTQMLAKGHDFPNLTLVVIIDIDQSLLSTDYRALERLGQLLVQVAGRAGRADKPG
RVILQTSQPDHPLLHQLVGHGYTPFARQLLEDRKRWHLPPFGYQALIRASSTASMEKALDFLEHVSQRLLAADGAGIQRL
GPIPAPLEKRANRYRAQLLLGSQQRAALHNALHQLLQHAANLPGRSSVRWSIDIDPIEFS

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=872420 RCF95_RS08495 WP_308874604.1 1408807..1410189(-) (priA) [Thiothrix subterranea strain DNT53]
ATGGCATGTTTGCACTCCGGCTTGAGTGATGGCGACCGCCTCAAAGCGTGGTTGCAAGCCCGCAGCGGCGCGGCGCAAAT
CATTATTGGCACGCGCTCGGCGATTTTCACCCCTGCACCCCACCTCGCGCTGATTGTGATTGACGAAGAACACGATGCTT
CCCTCAAACAACAGGAAGGTTTTCGCTATCACGCCCGTGATCTGGCGATTAAACGCGCCCAAATGTTGGATATTCCCATC
CTCATGGAAGCCGCCACGCCGTCGTTGGAAGCGCTGTACAATGCCCAAACGTCACGCTTTCATTACGCCCGCCTCGAACG
TCGCCCCGGCGCAGCACGCAAACCCGATTTACAGATTCAGGATACCCGCCCGTTTGAATTGCAAGCCGGTTTAACGCCGC
AAAGTTTGCAAGCCATTCGTGCGACCTTAGCGCGGGGCGAACAAATCATGGTATTCCTGAATCGGCGCGGGTTTGCGCCC
ACCCTGTTCTGCCCTTCCTGCGGCTGGCACGCCAATTGCGACCATTGCAGCGTGAAAATGACTTGGCACGCACGGCGTAA
CCGCTTGGTTTGCCACCATTGCGGCGCTGAACAAACCACGCCACTGCACTGCCCGGTGTGCAAAAATCCCCAACTCACCA
CCCAAGGCCAAGGCACGGAACGGCTGGAACTCACCCTGCAAACCACGTTTCCCGACGCCCTCGTGGTGCGCATTGACCGC
GACAGCACCAGCCGCAAAGGGCAGCTCGAAGACAAGCTCAGCACGGTGCGTAGCAATGACCCGCTGATTCTGGTCGGCAC
GCAAATGCTGGCGAAAGGTCACGATTTCCCCAATCTCACCTTGGTGGTGATTATTGACATTGACCAATCGCTGCTCAGCA
CCGATTACCGCGCTTTGGAACGCTTGGGGCAATTGCTGGTGCAAGTCGCGGGGCGGGCGGGGCGGGCTGACAAACCGGGG
CGGGTAATTTTGCAAACCAGCCAGCCGGATCACCCCTTATTGCACCAACTGGTCGGGCATGGCTATACCCCGTTTGCGCG
GCAATTGCTGGAAGATCGCAAACGCTGGCATTTACCGCCCTTCGGCTACCAAGCCTTGATTCGTGCCAGCAGCACCGCGA
GCATGGAGAAAGCTTTGGACTTTCTGGAACACGTCAGTCAACGCTTGCTGGCAGCGGATGGCGCGGGGATTCAGCGTTTG
GGGCCGATTCCCGCGCCGCTGGAAAAACGCGCCAACCGTTACCGGGCGCAATTGCTGTTGGGGAGTCAGCAACGCGCCGC
ATTGCACAACGCTTTGCACCAATTGCTGCAACACGCCGCAAACTTGCCGGGGCGTTCGAGCGTGCGCTGGTCGATTGATA
TTGATCCGATTGAGTTTAGCTAG

Domains

Predicted by InterproScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(173-198)

Primosomal protein N C-terminal domain (PriA_C)

(360-456)

Helicase conserved C-terminal domain (Helicase_C)

(250-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

49.024

100

0.491