Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RBQ61_RS07510 Genome accession   NZ_CP133188
Coordinates   1584266..1585621 (+) Length   451 a.a.
NCBI ID   WP_213925328.1    Uniprot ID   A0AA51DBT4
Organism   Sedimentibacter sp. MB35-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579266..1590621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBQ61_RS07485 (RBQ61_07485) - 1579715..1580752 (-) 1038 WP_308139865.1 PotD/PotF family extracellular solute-binding protein -
  RBQ61_RS07490 (RBQ61_07490) - 1580753..1581559 (-) 807 WP_308139866.1 ABC transporter permease -
  RBQ61_RS07495 (RBQ61_07495) - 1581553..1582395 (-) 843 WP_308139867.1 ABC transporter permease -
  RBQ61_RS07500 (RBQ61_07500) potA 1582397..1583437 (-) 1041 WP_308139868.1 spermidine/putrescine ABC transporter ATP-binding protein -
  RBQ61_RS07505 (RBQ61_07505) - 1583452..1583988 (-) 537 WP_308139869.1 helix-turn-helix domain-containing protein -
  RBQ61_RS07510 (RBQ61_07510) radA 1584266..1585621 (+) 1356 WP_213925328.1 DNA repair protein RadA Machinery gene
  RBQ61_RS07515 (RBQ61_07515) - 1585642..1586883 (+) 1242 WP_308139870.1 mechanosensitive ion channel family protein -
  RBQ61_RS07520 (RBQ61_07520) - 1586880..1587797 (+) 918 WP_308139871.1 AAA family ATPase -
  RBQ61_RS07525 (RBQ61_07525) - 1587778..1589547 (+) 1770 WP_308139872.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49592.30 Da        Isoelectric Point: 6.7219

>NTDB_id=872353 RBQ61_RS07510 WP_213925328.1 1584266..1585621(+) (radA) [Sedimentibacter sp. MB35-C1]
MARIKTKFVCQECGYETAKWLGKCPSCGQWNTFVEEVESKENSAKNQRGISKGKVERIQNITSTKKERYSTGSREMDRVL
GGGIIRSSLILVGGDPGIGKSTLLLQVADYVSSQKLKVLYVSGEESGEQIKIRADRLGVCDGELYVLSETNIDVIKELVE
KEEPDLLILDSIQTIYSPDTVSAPGSVSQVREVTAMVMRMTKIRNMATFIVGHVTKSGAIAGPRVLEHMVDTVLYFEGER
HFAYRILRSVKNRFGSTNEIGIFEMREKGLVEVENPSEVFLKGRPVDAYGTVVTAAMEGTRPVLIEIQALVTYSPAGFAN
RVTTGIDKNRAAMLIAVLEKKAGLAIQSSDTFINVTGGLQLREPAADLAILCAIASSFKEVPVDFKTILIGEVGLTGEIR
GVNSIEKRLIEAQKMGFERAVIAESNDTIKDIKNMELIPVNNIRQVMDLLF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=872353 RBQ61_RS07510 WP_213925328.1 1584266..1585621(+) (radA) [Sedimentibacter sp. MB35-C1]
ATGGCCAGAATAAAAACAAAGTTTGTTTGCCAGGAATGCGGCTACGAAACTGCCAAATGGCTGGGCAAGTGTCCGTCATG
CGGACAGTGGAACACCTTTGTAGAAGAAGTGGAATCAAAAGAAAACAGTGCTAAAAATCAAAGGGGCATAAGCAAGGGAA
AGGTTGAAAGAATTCAGAATATAACCTCAACAAAAAAAGAAAGGTATTCCACCGGCAGTCGTGAGATGGACAGAGTGCTT
GGCGGCGGAATAATAAGAAGCTCACTTATACTTGTTGGCGGTGATCCGGGCATAGGTAAGTCAACACTGCTTTTGCAGGT
TGCGGACTATGTCTCAAGTCAGAAGCTGAAGGTTCTTTATGTTTCTGGTGAAGAATCAGGAGAACAGATAAAAATAAGAG
CAGATAGGCTGGGAGTGTGTGACGGGGAGCTTTACGTGCTGTCTGAGACCAACATTGATGTTATAAAAGAATTAGTGGAA
AAAGAGGAGCCTGACCTTTTGATACTTGATTCCATACAGACCATTTATTCGCCAGATACGGTATCTGCGCCGGGAAGCGT
GAGCCAGGTAAGAGAGGTTACCGCCATGGTTATGCGAATGACCAAGATAAGGAACATGGCTACTTTTATTGTAGGGCATG
TTACTAAATCAGGTGCCATAGCCGGACCCAGGGTTTTGGAACATATGGTGGATACTGTTCTATATTTTGAGGGTGAAAGG
CATTTTGCCTACCGTATATTAAGATCTGTTAAAAATCGTTTTGGCTCAACAAACGAAATAGGTATTTTTGAAATGAGAGA
AAAGGGACTTGTTGAGGTGGAAAATCCATCGGAGGTTTTCTTAAAGGGCAGGCCTGTTGATGCATACGGAACGGTGGTTA
CTGCGGCAATGGAGGGAACCCGCCCCGTGCTTATAGAGATTCAGGCTCTTGTTACGTATTCACCGGCTGGTTTTGCAAAC
AGAGTCACCACGGGTATTGATAAGAACAGGGCGGCAATGCTGATTGCGGTGCTGGAGAAGAAAGCAGGACTGGCAATTCA
GAGTTCTGATACATTTATAAATGTAACAGGCGGCTTGCAGCTCAGAGAGCCGGCAGCCGATCTGGCGATACTTTGTGCTA
TTGCCTCAAGTTTCAAGGAAGTTCCTGTAGATTTTAAAACAATTTTAATAGGAGAAGTAGGCCTTACGGGAGAAATTAGG
GGAGTAAATTCCATTGAAAAACGCTTGATTGAGGCGCAGAAAATGGGATTTGAAAGAGCCGTAATCGCAGAATCCAATGA
TACAATCAAGGATATAAAAAACATGGAATTAATTCCTGTTAACAATATCAGACAAGTAATGGATTTACTATTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

55.263

100

0.559
  radA Streptococcus mitis NCTC 12261

55.263

100

0.559
  radA Streptococcus pneumoniae Rx1

55.263

100

0.559
  radA Streptococcus pneumoniae R6

55.263

100

0.559
  radA Streptococcus pneumoniae TIGR4

55.263

100

0.559
  radA Streptococcus mitis SK321

55.044

100

0.557
  radA Bacillus subtilis subsp. subtilis str. 168

54.386

100

0.55