Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABJ95_RS22105 Genome accession   NZ_AP027543
Coordinates   4548116..4549108 (-) Length   330 a.a.
NCBI ID   WP_338383817.1    Uniprot ID   -
Organism   Escherichia coli strain LR-48     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4543116..4554108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ95_RS22095 (VEE34_42450) yieP 4546008..4546700 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AABJ95_RS22100 (VEE34_42460) mdtD 4546723..4548150 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  AABJ95_RS22105 (VEE34_42470) cytR 4548116..4549108 (-) 993 WP_338383817.1 ribose operon transcriptional repressor RbsR Regulator
  AABJ95_RS22110 (VEE34_42480) rbsK 4549112..4550041 (-) 930 WP_244075135.1 ribokinase -
  AABJ95_RS22115 (VEE34_42490) rbsB 4550167..4551057 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABJ95_RS22120 (VEE34_42500) rbsC 4551082..4552047 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AABJ95_RS22125 (VEE34_42510) rbsA 4552052..4553557 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AABJ95_RS22130 (VEE34_42520) rbsD 4553565..4553984 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36542.80 Da        Isoelectric Point: 5.0626

>NTDB_id=87226 AABJ95_RS22105 WP_338383817.1 4548116..4549108(-) (cytR) [Escherichia coli strain LR-48]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSSEIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=87226 AABJ95_RS22105 WP_338383817.1 4548116..4549108(-) (cytR) [Escherichia coli strain LR-48]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGAGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment