Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RAM80_RS15395 Genome accession   NZ_CP133165
Coordinates   3308238..3308636 (-) Length   132 a.a.
NCBI ID   WP_416427337.1    Uniprot ID   -
Organism   Pseudomonas sp. App30     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3303238..3313636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM80_RS15380 (RAM80_15350) - 3305227..3307278 (-) 2052 WP_416427334.1 methyl-accepting chemotaxis protein -
  RAM80_RS15385 (RAM80_15355) - 3307309..3307842 (-) 534 WP_416427335.1 chemotaxis protein CheW -
  RAM80_RS15390 (RAM80_15360) pilH 3307852..3308217 (-) 366 WP_416427336.1 twitching motility response regulator PilH -
  RAM80_RS15395 (RAM80_15365) pilG 3308238..3308636 (-) 399 WP_416427337.1 twitching motility response regulator PilG Regulator
  RAM80_RS15400 (RAM80_15370) gshB 3308823..3309776 (+) 954 WP_416427338.1 glutathione synthase -
  RAM80_RS15405 (RAM80_15375) - 3309888..3310793 (+) 906 WP_416427339.1 TonB family protein -
  RAM80_RS15410 (RAM80_15380) - 3310859..3311428 (+) 570 WP_416427489.1 YqgE/AlgH family protein -
  RAM80_RS15415 (RAM80_15385) ruvX 3311428..3311868 (+) 441 WP_416427340.1 Holliday junction resolvase RuvX -
  RAM80_RS15420 (RAM80_15390) pyrR 3311923..3312435 (+) 513 WP_416427341.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RAM80_RS15425 (RAM80_15395) - 3312447..3313451 (+) 1005 WP_416427342.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14482.87 Da        Isoelectric Point: 7.9136

>NTDB_id=872253 RAM80_RS15395 WP_416427337.1 3308238..3308636(-) (pilG) [Pseudomonas sp. App30]
MEQHPAALKVMVIDDSKTIRRTAQMLLENVGCEVITATDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKARGRIVGSDQFLTKPFSKEELLGAIRAHVPGFAAAH

Nucleotide


Download         Length: 399 bp        

>NTDB_id=872253 RAM80_RS15395 WP_416427337.1 3308238..3308636(-) (pilG) [Pseudomonas sp. App30]
ATGGAACAGCACCCCGCAGCGCTCAAGGTCATGGTCATCGACGACTCCAAGACGATTCGTCGCACCGCCCAGATGCTGCT
CGAAAATGTCGGCTGCGAGGTCATCACGGCCACCGACGGCTTCGATGCATTGGCCAAGATCGCCGACAATCATCCGCGTA
TCATCTTTGTCGATATCATGATGCCGCGCCTGGACGGTTACCAGACCTGTGCGCTGATCAAGAACAACAGCGCGTTCAAG
GCCACCCCGGTGATCATGCTGTCGTCGCGCGACGGCCTGTTCGACAAGGCCCGCGGGCGCATCGTGGGCTCCGACCAGTT
CCTGACCAAGCCCTTCAGCAAGGAAGAACTGCTGGGCGCCATCAGGGCGCACGTACCGGGCTTCGCCGCCGCGCACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.8

94.697

0.689