Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   QL104_RS02245 Genome accession   NZ_CP133164
Coordinates   494261..496480 (-) Length   739 a.a.
NCBI ID   WP_053132480.1    Uniprot ID   A0A7X1PQF3
Organism   Pseudomonas piscis strain 75     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489261..501480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL104_RS02225 (QL104_02225) hslU 489508..490851 (-) 1344 WP_022639725.1 ATP-dependent protease ATPase subunit HslU -
  QL104_RS02230 (QL104_02230) hslV 490934..491464 (-) 531 WP_007968352.1 ATP-dependent protease subunit HslV -
  QL104_RS02235 (QL104_02235) - 491653..492360 (-) 708 WP_022639727.1 SPOR domain-containing protein -
  QL104_RS02240 (QL104_02240) argS 492362..494098 (-) 1737 WP_085595662.1 arginine--tRNA ligase -
  QL104_RS02245 (QL104_02245) priA 494261..496480 (-) 2220 WP_053132480.1 primosomal protein N' Machinery gene
  QL104_RS02250 (QL104_02250) rpmE 496744..496965 (+) 222 WP_011058815.1 50S ribosomal protein L31 -
  QL104_RS02255 (QL104_02255) - 497007..497792 (+) 786 WP_282879004.1 thermonuclease family protein -
  QL104_RS02260 (QL104_02260) - 497980..499248 (+) 1269 WP_022639732.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81939.38 Da        Isoelectric Point: 8.4271

>NTDB_id=872218 QL104_RS02245 WP_053132480.1 494261..496480(-) (priA) [Pseudomonas piscis strain 75]
MPDAILRLALPSPLRRLFDYRAPAGVLRAQLQPGMRLRVPFGRREMIGILVQVADHSEVPADKLKPALALLDPTPPLPAA
LFKLCLWTAQYYQHSLGDTLSWALPVLLRQGEPAEARQERFWSIAPGARLDDPRIARAPRQRDALTTLAQHPHGVPHGLL
SKLMLSKDSLDLLLAKELVQVEVRRHAPGARHEHWLAQPELPLNSEQRAAYEAIRAGFDSYHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQEDIPIVLGSATPSLESLHNAYTGRYGLLRMNERAGGAKPPRFLRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWMSECERCDARMTVHQRSGELRCHHCGHVERVPRHC
PQCGKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGQPCILVGTQMLAKGHHFPRVTLVAI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLVQLTEQGYFAFAEQALSERRAAGLPPFAHL
ALLRAEAHKPGQAEAFLDEACSEAERLLAEQQSAGIELLGPVPAPMERRAGRYRAQLLLQANARAPLHRLLSSWLLVLEQ
MPGGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=872218 QL104_RS02245 WP_053132480.1 494261..496480(-) (priA) [Pseudomonas piscis strain 75]
GTGCCCGACGCCATCCTGCGCCTCGCCCTGCCCTCGCCCCTGCGCCGCCTGTTCGACTATCGTGCCCCGGCCGGCGTGCT
GCGCGCGCAACTGCAGCCGGGCATGCGCCTGCGGGTGCCGTTCGGCCGTCGCGAGATGATCGGCATCCTGGTCCAGGTGG
CCGATCACAGTGAGGTGCCGGCGGACAAGCTCAAGCCGGCCCTGGCCCTGCTCGACCCCACGCCGCCGCTGCCGGCGGCC
TTGTTCAAGCTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGGGATACCCTGAGCTGGGCGCTGCCGGTGCT
GCTGCGCCAGGGCGAACCGGCCGAGGCCCGCCAGGAGCGCTTCTGGTCGATAGCCCCCGGCGCCCGCCTTGACGATCCGC
GCATCGCCCGTGCCCCACGCCAGCGCGACGCCCTGACGACCCTGGCCCAGCACCCTCACGGCGTCCCCCACGGGTTGCTG
AGCAAGTTGATGTTGAGCAAGGACAGCCTGGACCTGCTGCTGGCCAAGGAGCTGGTCCAGGTGGAAGTGCGCAGGCATGC
CCCCGGGGCCCGCCACGAACACTGGCTGGCCCAGCCGGAACTGCCACTCAACAGCGAACAACGTGCCGCCTACGAGGCCA
TCCGCGCCGGATTCGACAGCTACCATGCCTTTCTCCTGGCAGGGGTCACCGGCAGCGGCAAGACCGAGGTCTACCTGCAA
CTGATCCGCGAAACCCTCGAAGCTGGCAAGCAGGCCCTGGTGCTGATTCCGGAGATCAACCTCGGCCCCCAGACCCTGGC
GCGCTTCGAACAGCGTTTCAATGCGCGCATCGCCCTGCTGCACTCGGCGGTCAACGACCGCGAACGCCTGGACGCCTGGC
TGGCCGCCCGGGACGGCGAGGCCGACATCATCATCGGCACCCGTTCCGCGCTGTTCACGCCGATGAAGAATCCCGGCCTG
ATCATCATCGACGAGGAGCACGACGGCTCCTATAAACAGCAGGAGGGCCTGCGCTACCACGCCCGGGACCTGGCCCTGGT
CCGCGCCCGCCAGGAAGACATCCCGATCGTCCTGGGTTCGGCCACCCCTTCCCTGGAAAGCCTGCACAACGCCTACACCG
GCCGCTATGGCCTGCTGCGCATGAACGAACGGGCCGGCGGCGCCAAGCCGCCGCGCTTCCTGCGCCTGGACGTCAAGAGC
CGGCCGCTGGACAGCGGCATCTCCGGCCCCATGCAGCAGGCTATCGGCCAGACCCTGGCCGCCGGGCAACAGGTCCTGGT
GTTCCTCAATCGCCGCGGCTTCGCCCCGACCCTGCTGTGCCATGACTGCGGCTGGATGTCCGAATGCGAGCGCTGCGACG
CCCGCATGACGGTACACCAACGCTCGGGCGAGCTGCGTTGCCACCATTGCGGCCATGTGGAGCGAGTGCCGCGGCATTGC
CCGCAGTGCGGCAAGGTCGATCTGCGGCCGGTGGGCGCCGGCACCGAACGGGCGGAAGAGCGCCTGGGCATCCTGTTCCC
CGACTACCCGGTCCTGCGGGTGGACCGCGACAGCACCTCGCGCAAGGACGCGATGAACCAGCTGTTCGCCACCATCCAGA
AGGGCCAGCCGTGCATCCTGGTGGGCACGCAGATGCTCGCCAAGGGGCATCACTTCCCCAGGGTGACCCTGGTGGCGATC
CTGGATGCCGACGGCGGCCTGTTTTCCGGGGACTTTCGCGCCAGCGAACGCATGGCGCAATTGATCGTCCAGGTGGCCGG
CCGCGCAGGCCGCGCCGAGGAACCGGGCAAGGTGATCATCCAGACGCACTTGGCCGATCACCCGCTGCTGGTGCAGCTGA
CCGAGCAAGGCTACTTCGCCTTCGCCGAGCAAGCCCTGAGCGAACGCCGCGCCGCCGGCCTGCCGCCCTTCGCCCACTTG
GCGCTGCTGCGGGCCGAAGCCCACAAGCCGGGCCAGGCCGAGGCCTTCCTCGACGAAGCTTGCAGCGAGGCCGAGCGCCT
GCTGGCCGAACAGCAGTCGGCAGGGATCGAATTGCTCGGACCGGTGCCCGCGCCCATGGAGCGCCGGGCCGGGCGCTATC
GAGCGCAATTGCTGCTGCAGGCCAATGCCCGGGCACCGCTGCACCGCCTGCTCAGCAGCTGGCTGCTGGTGCTGGAGCAG
ATGCCCGGCGGCCGGCAGGTTCGCTGGTCACTGGATGTGGACCCGGTCGACCTGTACTGA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

Helicase conserved C-terminal domain (Helicase_C)

(522-592)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

DEAD/DEAH box helicase (DEAD)

(207-367)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1PQF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

48.188

100

0.486