Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   Q9Q86_RS10690 Genome accession   NZ_CP133162
Coordinates   2179547..2181772 (+) Length   741 a.a.
NCBI ID   WP_171293756.1    Uniprot ID   -
Organism   Acinetobacter sp. A22     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2174547..2186772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9Q86_RS10665 - 2174621..2175460 (+) 840 WP_004916742.1 HlyC/CorC family transporter -
  Q9Q86_RS10670 lnt 2175457..2177016 (+) 1560 WP_112987114.1 apolipoprotein N-acyltransferase -
  Q9Q86_RS10675 - 2177072..2177416 (-) 345 WP_112987113.1 hypothetical protein -
  Q9Q86_RS10680 gspG 2177680..2178117 (-) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  Q9Q86_RS10685 gspF 2178141..2179346 (-) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  Q9Q86_RS10690 priA 2179547..2181772 (+) 2226 WP_171293756.1 primosomal protein N' Machinery gene
  Q9Q86_RS10695 - 2181807..2183627 (+) 1821 WP_112987111.1 cation:proton antiporter -
  Q9Q86_RS10700 hslO 2183747..2184622 (+) 876 WP_112987110.1 Hsp33 family molecular chaperone HslO -
  Q9Q86_RS10705 - 2184955..2185899 (+) 945 WP_112987109.1 DnaJ C-terminal domain-containing protein -
  Q9Q86_RS10710 - 2185911..2186237 (+) 327 WP_004957551.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84099.94 Da        Isoelectric Point: 8.4025

>NTDB_id=872195 Q9Q86_RS10690 WP_171293756.1 2179547..2181772(+) (priA) [Acinetobacter sp. A22]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITVLLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILTHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLIECQLEAHDFTPMPVQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEILKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLRAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=872195 Q9Q86_RS10690 WP_171293756.1 2179547..2181772(+) (priA) [Acinetobacter sp. A22]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACCTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTAATCG
GTATCATTACTGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGTACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGTCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTCACAC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGC
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAGGCATTGGAAAAAAAGGGACTGATTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTGTACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATTCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGTGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGATCCTAAAGCAAGGGAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACAGTCGCACGCTTCAAATCTCGTTTTCATTGTGATGTTGCTTTACTGCACTCGGGACTTAATGATTCAAAAC
GTTTGCAGGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGCTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATCTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTATATCGTGGTCATTTACACAATTGTCCTGTGATTTTGGGTTCAGCCACACCAAGTATTGATAGTTATC
ATCTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTCCTAAACCGTCGAGGTTACGCTCCTGTTTTACTATGTGAAAGTTGTGGGTGGCAAGCAAATT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAAACGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTAATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATCTTGTTAGGTACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATAGACTCAGGATTATTAAGCGTAGACCCAAGAGCACCTGAGCGCACAGCACAATT
GATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTATATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCCGTTGCAAAACAGATGCTGAGTGAACGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTAATGGAAGCAGC
ACAAGGCTTAAGAGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.326

99.73

0.811