Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   RB208_RS05280 Genome accession   NZ_CP133147
Coordinates   1024621..1025199 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain Bacillius velezensis JYC520     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019621..1030199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB208_RS05255 - 1020121..1020636 (-) 516 WP_369878811.1 methyl-accepting chemotaxis protein -
  RB208_RS05260 - 1020880..1021539 (-) 660 Protein_972 protoglobin domain-containing protein -
  RB208_RS05265 (RB208_05270) - 1021536..1023059 (-) 1524 WP_032874378.1 FAD-dependent oxidoreductase -
  RB208_RS05270 (RB208_05275) - 1023184..1024041 (+) 858 WP_032874380.1 SDR family oxidoreductase -
  RB208_RS05275 (RB208_05280) - 1024072..1024305 (-) 234 WP_032874382.1 IDEAL domain-containing protein -
  RB208_RS05280 (RB208_05285) comK 1024621..1025199 (+) 579 WP_003155179.1 competence protein ComK Regulator
  RB208_RS05285 (RB208_05290) - 1025345..1025713 (+) 369 WP_032874384.1 iron chaperone -
  RB208_RS05290 (RB208_05295) - 1025740..1026111 (+) 372 WP_032874386.1 iron chaperone -
  RB208_RS05295 (RB208_05300) - 1026245..1026955 (-) 711 WP_003155170.1 YrpD family protein -
  RB208_RS05300 (RB208_05305) - 1027151..1027420 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  RB208_RS05305 (RB208_05310) - 1027453..1027770 (-) 318 WP_003155166.1 YbjQ family protein -
  RB208_RS05310 (RB208_05315) - 1027811..1029280 (-) 1470 WP_015388467.1 sodium:solute symporter family protein -
  RB208_RS05315 (RB208_05320) - 1029277..1029477 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  RB208_RS05320 (RB208_05325) - 1029598..1029957 (-) 360 WP_012117241.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=872079 RB208_RS05280 WP_003155179.1 1024621..1025199(+) (comK) [Bacillus velezensis strain Bacillius velezensis JYC520]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=872079 RB208_RS05280 WP_003155179.1 1024621..1025199(+) (comK) [Bacillus velezensis strain Bacillius velezensis JYC520]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823