Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K6K02_RS11920 Genome accession   NZ_AP024626
Coordinates   2306633..2307253 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3125     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2301633..2312253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K02_RS11880 (BsBEST3125_22710) ptsA 2302764..2303270 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  K6K02_RS11885 (BsBEST3125_22720) ypqA 2303408..2303827 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  K6K02_RS11890 (BsBEST3125_22730) sppG 2303848..2304225 (-) 378 WP_004398696.1 YppG family protein -
  K6K02_RS11895 (BsBEST3125_22740) yppF 2304413..2304601 (+) 189 WP_003230690.1 YppF family protein -
  K6K02_RS11900 (BsBEST3125_22750) yppE 2304640..2305011 (-) 372 WP_003246080.1 YppE family protein -
  K6K02_RS11905 (BsBEST3125_22760) yppD 2305057..2305302 (-) 246 WP_004398488.1 YppD family protein -
  K6K02_RS11910 sspM 2305501..2305605 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  K6K02_RS11915 (BsBEST3125_22770) yppC 2305630..2306592 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  K6K02_RS11920 (BsBEST3125_22780) recU 2306633..2307253 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  K6K02_RS11925 (BsBEST3125_22790) ponA 2307275..2310019 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  K6K02_RS11930 (BsBEST3125_22800) ypoC 2310095..2310589 (-) 495 WP_009967579.1 YpoC family protein -
  K6K02_RS11935 (BsBEST3125_22810) nth 2310586..2311245 (-) 660 WP_009967580.1 endonuclease III -
  K6K02_RS11940 (BsBEST3125_22820) dnaD 2311264..2311962 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=87203 K6K02_RS11920 WP_004399067.1 2306633..2307253(+) (recU) [Bacillus subtilis strain BEST3125]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=87203 K6K02_RS11920 WP_004399067.1 2306633..2307253(+) (recU) [Bacillus subtilis strain BEST3125]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment